PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000477.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 369aa    MW: 40926.5 Da    PI: 6.798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000477.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33217275159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H h+
  CCG000477.1 217 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHIHP 275
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-35202277IPR003657WRKY domain
SuperFamilySSF1182901.31E-29209277IPR003657WRKY domain
PROSITE profilePS5081133.327212277IPR003657WRKY domain
SMARTSM007741.4E-40217276IPR003657WRKY domain
PfamPF031063.5E-27218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNEMKQNHDI SIVRINSVEK REEKKELTRT ALKTENFNMA NSTFITPPPT SDIDHMPNVF  60
SLSTPPPPPP PTSSIFDMIP CDISTGGDQK AGSLGFMDLL DINQDFGASA SLFDWFNQNP  120
VVGSPQQQQS FVPSPASTVP ETSEVLNNPA TPNSSASISS SSNEAGEDAF QQVKAGDQEE  180
EQDQDKNKKQ LKPKKRSQKR LREPRFAFMT KSEVDHLDDG YRWRKYGQKA VKNSPYPRSY  240
YRCTSAGCGV KKRVERSSDD PSIVVTTYEG QHIHPSPIIR GSIGILADSS GFGAATSSFV  300
FPQPLYQQKD ASMYSSSPSL NFTSSTSRFS PSFSLQERRL GSPSSLLRDH GLLQDIVPSQ  360
IIRKEFKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-282102771077Probable WRKY transcription factor 4
2lex_A2e-282102771077Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019638.10.0PREDICTED: probable WRKY transcription factor 48 isoform X1
RefseqXP_011019646.10.0PREDICTED: probable WRKY transcription factor 48 isoform X1
RefseqXP_011019653.10.0PREDICTED: probable WRKY transcription factor 48 isoform X1
TrEMBLB9HIL90.0B9HIL9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-51WRKY DNA-binding protein 48