PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000506.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 222aa MW: 25370.3 Da PI: 9.4529

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000506.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	43	7.2e-14	75	163	51	136
GRAS 51 arlarsvselykalppsetseknsseelaalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136 +r++r++s+ +++ +ets n e+++a +l f+e + +fsh++ +aI+e v + +r+ i+D++i GlQW ++qaLasR CCG000506.1 75 ERINRETSRAASKGYIKETS-FNIYEAMMAPSLsimaFYEQNSFSRFSHFAGIRAIVENVGETKRILILDLEIRTGLQWTLFMQALASRG 163 57777667766666666665.4555555555545566***************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.525	1	222	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-11	75	163	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRGLIEPKKE KQLPFSSASL ELLKNHADGL KQLNSERHLE PINDKLFTGV VKRELSTEEI 60 VRIAGERFIQ SSQTERINRE TSRAASKGYI KETSFNIYEA MMAPSLSIMA FYEQNSFSRF 120 SHFAGIRAIV ENVGETKRIL ILDLEIRTGL QWTLFMQALA SRGKRLMSFA QTMNLPFSFN 180 VVMVSDMRDL REDLELDSEG KKAVFSEFFL TSLIAPPNRL IP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316032.1	3e-57	DELLA protein RGL2
TrEMBL	B9HWZ7	7e-56	B9HWZ7_POPTR; Uncharacterized protein
STRING	POPTR_0010s15350.1	1e-56	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	9e-11	RGA-like 2