PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000518.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 928aa MW: 104242 Da PI: 7.0165

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000518.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160	4.5e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwl+++ei+a+L n++ +++ ++ + p sg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ ptf rrcy CCG000518.1 30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVNLPMSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDIPTFVRRCY 127 4459******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le+ivlvhy+e++ CCG000518.1 128 WLLDKTLEHIVLVHYRETQ 146 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.993	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-44	32	144	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	1.2E-6	378	464	IPR002909	IPT domain
SuperFamily	SSF81296	2.17E-14	379	465	IPR014756	Immunoglobulin E-set
Pfam	PF12796	2.8E-7	563	643	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.8E-16	563	676	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.06E-15	563	673	No hit	No description
SuperFamily	SSF48403	2.8E-17	564	676	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.459	581	646	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.2E-6	614	643	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.915	614	646	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.51E-6	725	828	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	25	777	799	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.76	778	807	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.4E-4	800	822	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.109	801	825	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.5E-4	802	822	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	19	880	902	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	882	910	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MESGYSDRLV GSEIHGFHTL QDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN 60 LPMSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP 120 TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPATPVNSHS SSVSDQSAPG LLSEESDSGA 180 ARGYYAGEKD LGPSDSLTVI NHAMRLHELN TLEWDDLLTN DPGNSILHGG DKIPSFDQQN 240 QIAVKGSVND GSTLSGYQLS AEKSALGNLT EAVVRNGNTQ FSGPDNVYRQ LTTDSQEYLD 300 AQRKNSVVLG AGDSLDILIN DGLQSQDSFG RWMNSIIDDS PVSVDDAVVE SSISSGYDSF 360 ASPGMDQHQS SIQEQMFIIT DFSPAWGFSN ETTKILVTGY FHEQYLHLAK SNLFCICGDA 420 FVPAEIVQAG VYSCMVSPHS PGLVNLCLSL DGSKPISQIL NFEYRAPLVH DSVVFSEVKS 480 KWEEFHLQMR LAYLLFSTSK TLNVLSSKVS PAKLKEAKKF AHRTSNISNS WAYLIKSIED 540 NRISVAQAKD GLFELSLKNT IKEWLLERVL EGCKTTEYDA QGLGVIHLCA IIGYTWAVYL 600 FSWSGLSLDF RDKHGWTALH WAAYYGREKM VAALLSAGAK PNLVTDPTKE NPGGCTAADL 660 ASAKGYDGLA AYLSEKALVA QFESMIIAGN ASGSLQTTAT DTVNSENLSE EELHLKDTLA 720 AYRTAADAAA RIQAAFREHS LKVYTKAVQS SSPEDEARNI IAAMKIQHAF RNYESKKKMA 780 AAAHIQHRFR TWKMRKNFLN MRRQAIKIQA AFRGFQVRKQ YRKIIWSVGL LEKAILRWRL 840 KRKGFRGLQV EPVETDVDPK HESDKEEDFY KISQKQAGER VERSVIRVQA MFRSKQAQEQ 900 YRRMKLTYNQ ATVEYEGLLD TDMVEGDL

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MESGYSDRLV GSEIHGFHTL QDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN  60
LPMSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP  120
TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPATPVNSHS SSVSDQSAPG LLSEESDSGA  180
ARGYYAGEKD LGPSDSLTVI NHAMRLHELN TLEWDDLLTN DPGNSILHGG DKIPSFDQQN  240
QIAVKGSVND GSTLSGYQLS AEKSALGNLT EAVVRNGNTQ FSGPDNVYRQ LTTDSQEYLD  300
AQRKNSVVLG AGDSLDILIN DGLQSQDSFG RWMNSIIDDS PVSVDDAVVE SSISSGYDSF  360
ASPGMDQHQS SIQEQMFIIT DFSPAWGFSN ETTKILVTGY FHEQYLHLAK SNLFCICGDA  420
FVPAEIVQAG VYSCMVSPHS PGLVNLCLSL DGSKPISQIL NFEYRAPLVH DSVVFSEVKS  480
KWEEFHLQMR LAYLLFSTSK TLNVLSSKVS PAKLKEAKKF AHRTSNISNS WAYLIKSIED  540
NRISVAQAKD GLFELSLKNT IKEWLLERVL EGCKTTEYDA QGLGVIHLCA IIGYTWAVYL  600
FSWSGLSLDF RDKHGWTALH WAAYYGREKM VAALLSAGAK PNLVTDPTKE NPGGCTAADL  660
ASAKGYDGLA AYLSEKALVA QFESMIIAGN ASGSLQTTAT DTVNSENLSE EELHLKDTLA  720
AYRTAADAAA RIQAAFREHS LKVYTKAVQS SSPEDEARNI IAAMKIQHAF RNYESKKKMA  780
AAAHIQHRFR TWKMRKNFLN MRRQAIKIQA AFRGFQVRKQ YRKIIWSVGL LEKAILRWRL  840
KRKGFRGLQV EPVETDVDPK HESDKEEDFY KISQKQAGER VERSVIRVQA MFRSKQAQEQ  900
YRRMKLTYNQ ATVEYEGLLD TDMVEGDL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	0.0	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020359.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X3
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3N7FIW0	0.0	A0A3N7FIW0_POPTR; Uncharacterized protein
STRING	POPTR_0008s10730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]