PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000622.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 309aa    MW: 34201.9 Da    PI: 4.4514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000622.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1689137254
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  +  GVr++k +g+W+AeIr p++   + r +lg+f t eeAa+a++a ++++e
  CCG000622.1  89 KPVGVRQRK-WGKWAAEIRNPVT---KVRTWLGTFNTLEEAAQAYEAKKQEYE 137
                  789*****9.**********654...5***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-1988131No hitNo description
SMARTSM003807.7E-1289138IPR001471AP2/ERF domain
PROSITE profilePS5103217.29389146IPR001471AP2/ERF domain
PfamPF008473.5E-1189138IPR001471AP2/ERF domain
PRINTSPR003677.7E-790101IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1591136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1992133IPR001471AP2/ERF domain
PRINTSPR003677.7E-7112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRKIRVIWND PYATETDSSD DESDKRSFKK RFVREINLPL AVSPQPKALE PESSCQDSNN  60
SANPPSKRRR VLPKTPTSTT EEKKPAPKKP VGVRQRKWGK WAAEIRNPVT KVRTWLGTFN  120
TLEEAAQAYE AKKQEYEALA LAMAASEKSH IMTCGGVSQS HSHSSCKNQG SSASDETDES  180
VVSHTSPASV LELETSVVSN VTGDFGLSIK DEDICASVAD LDIPDLAFMS DPLASCPFEH  240
DLNLGQEVGN LIDEFGRFYD DYCGIVDLDI CGLNGDEPSD LPDYDFEFGN EEFSYLDDHQ  300
QKPLNIACL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2758310.0JX275831.1 Populus deltoides isolate Q18 ERF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022088.10.0PREDICTED: ethylene-responsive transcription factor ERF119
TrEMBLJ7G4L40.0J7G4L4_POPDE; ERF
STRINGPOPTR_0008s11900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.24e-35ERF family protein