PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000624.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 440aa    MW: 48717.8 Da    PI: 6.0524
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000624.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.11e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  CCG000624.1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                 578*****************************667888888876 PP
2CCT67.92.7e-23392435144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  CCG000624.1 392 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 435
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9781461IPR000315B-box-type zinc finger
SMARTSM003366.7E-111461IPR000315B-box-type zinc finger
PfamPF006439.4E-81659IPR000315B-box-type zinc finger
CDDcd000219.53E-101761No hitNo description
PfamPF062035.9E-18392434IPR010402CCT domain
PROSITE profilePS5101716.083392434IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MICNKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS  120
DEISHEDNEE EHLLYRVPIF DPSVADLCAS TTISNEAPAG GNGCTDQRVA DSNGVESKIL  180
IGAIERRDVE SLPGFLPSDT DLAEFAADME SLLGRGLENE SFGMEELGLM DCKEEKEFEV  240
KGFPLWNGKV KVEDEENAGV ERKAVRKCHA GIETGTAKEP IFELSFDFNS PATCGEEDEK  300
VGIEEGDLKN TRGEYEDDDG AKRKILLSLD YEAVMTAWAS QGSPWTNGNR PDFDPDECWP  360
DCMGICGAQL HHPYGDMISG LGAHPAMMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN  420
AEKRPRMKGR FVKRTTLAGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402418RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470810.0EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022115.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A1L6K4S30.0A0A1L6K4S3_POPTO; Zinc finger family protein-like 2
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-101B-box type zinc finger protein with CCT domain