PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000639.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 314aa    MW: 36064.5 Da    PI: 6.4032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000639.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++++G g+W+  ar  g++Rt+k+c++rw++yl
      CCG000639.1 20 RGPWTLEEDTLLTHYITLHGEGRWNMLARGAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      CCG000639.1  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1391567IPR017930Myb domain
SuperFamilySSF466896.74E-3018114IPR009057Homeodomain-like
SMARTSM007179.1E-141969IPR001005SANT/Myb domain
PfamPF002492.5E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-222174IPR009057Homeodomain-like
CDDcd001673.10E-102267No hitNo description
PROSITE profilePS5129425.06368122IPR017930Myb domain
SMARTSM007172.7E-1572120IPR001005SANT/Myb domain
PfamPF002491.4E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2375121IPR009057Homeodomain-like
CDDcd001671.42E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MLGVRKRICN PREEENELRR GPWTLEEDTL LTHYITLHGE GRWNMLARGA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTKVQK  120
EARQLNIEAN SKRFLDAVRS YWMPRLIQKI EQASYSSSLT TLDSLADREV RSTSSNPPVH  180
NSLPTLLCPP ESRFTHYSNP DSENSFSVTS PYLLSTNSNT IPQQPYEILE NPSCSPLPGD  240
TVCNNLILSD TYNKEGSSYD IDGFNVASAG MGTHDNSPLE CQVAEGNWVF DSMEDTLWNM  300
DDMWVFRDLR ETGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-24612218128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345593e-37AB434559.1 Fagus crenata FcMYBS14 mRNA for transcription factor MYBS14, partial cds.
GenBankAB4345933e-37AB434593.1 Fagus crenata FcMYBC1 mRNA for transcription factor MYBC1, partial cds.
GenBankAB4346073e-37AB434607.1 Fagus crenata FcMYBD2 mRNA for transcription factor MYBD2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022276.10.0PREDICTED: transcription factor MYB108
SwissprotQ9C9G73e-91MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1L6K4R50.0A0A1L6K4R5_POPTO; Uncharacterized protein
STRINGPOPTR_0008s12130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-92myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]