PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000761.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 671aa    MW: 72472.2 Da    PI: 6.6219
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000761.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28223276155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  CCG000761.1 223 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 276
                  79*******************.********************************8 PP
2Response_reg76.31.1e-25401481109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + ++ll+++l +  y +v++++++++al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k Ga 
   CCG000761.1  40 VLVVDDDITCLRLLEKMLHRCLY-HVTTCSQATAALKLLRERKgcFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHGAC 134
                   89*********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   CCG000761.1 135 DYLIKPIREEELKN 148
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.5E-4237172No hitNo description
SuperFamilySSF521721.42E-3537161IPR011006CheY-like superfamily
SMARTSM004484.7E-3038150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.52339154IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.2E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.62E-2741154No hitNo description
Gene3DG3DSA:1.10.10.602.0E-29220281IPR009057Homeodomain-like
PROSITE profilePS5129410.954220279IPR017930Myb domain
SuperFamilySSF466892.87E-19221280IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24223276IPR006447Myb domain, plants
PfamPF002492.2E-6225274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAALQRVASS LGTSASTYGL CKGAGADVIV SDQFPAGLRV LVVDDDITCL RLLEKMLHRC  60
LYHVTTCSQA TAALKLLRER KGCFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG  120
RTSAVMRGIK HGACDYLIKP IREEELKNIW QHVIRKKWNG NKEQEHSGSF EDTDRHKRGN  180
DAENASSVSE GAEGVLKGQK KRTIAKDEDD AEFENDDPSA SKKPRVVWSV ELHQQFVSAV  240
NHLGIDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQGGV SNTFCGLLDS  300
NVKLNPLARF DIQVLAASGQ IPPQTLAALH AELFGNPGGS MVTTVDQPAL LQASVQGPKC  360
IPAEHGMAFG QPLVKCQTNM SKHYPQNVVS AEEVATGFVA WPSNSVGTVG PISNLGGMSS  420
KNSNMLMDVV QQQKQQQQSL QLPSLPEPNR IINVQPSCLV VPSQSAATFQ AGNSPASVNQ  480
NCSYSRSPMI DYSLLSPQSN NSSLNIGQIS NGDLKTTGVS GYSGSGSISP LSSCSVNPDN  540
NSQQGQSSTM TIRATRQLPG LGPYISNFQG SYGAKSSEVL DQGPLRNLGF VGKCTSIPSR  600
LAVDEFESTT SNLEHEKLYM ETNGNPVKQE PNGNAVKQEP NIEFMDNAKV LIPILPQLPP  660
TTSDLMSVFT E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24219282164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081400.0FN908140.1 Populus x canadensis mRNA for putative B-type response regulator 15 (rr15 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024263.10.0PREDICTED: two-component response regulator ARR1-like
SwissprotA2XE311e-162ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-162ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HJH20.0B9HJH2_POPTR; Two-component response regulator
TrEMBLD7GN450.0D7GN45_POPCA; Two-component response regulator
STRINGPOPTR_0008s13490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-120response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]