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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CCG000795.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31387.9 Da PI: 9.9255 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG000795.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 317.3 | 4.9e-97 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd+ + n+gyyep+ ke lglq m s+ +rdak r+ +++ ++a+ ++d m++ +rd++++ +k+l++l
CCG000795.1 1 MDDDALNMHNWGYYEPS--YKEPLGLQWMPSMVDRDAKHflprRDPINIMIGANGAYLPHDcvvsdapehMNY-MRDSWINR---------EKFLNIL 86
9***9988*******99..999****************999987766669*******************9***.9******9.........8999999 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
+ + + + v ++t+ + s+q+ l+++ ++ + +e++ +++ + ++ +++++ + ++k+pk+kk +k+k+ ++++
CCG000795.1 87 PPNPN--------YVVPPQTSGAYSMQM-----LQPPNSSrDERLSRIEEPSVSN-EGSQLKRRQVG-GTSPKTPKAKKPRKPKD--------GNNNT 161
95544........667789999999999.....5555554234455556666555.55555555555.56666677666666666........22222 PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+ +r+k kks+d+v+ng+++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkrrgaRiagrKmSqgafkk+LekLaae y+++
CCG000795.1 162 V-QRAKPAKKSVDVVINGIDMDISGIPIPICSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEAYNFA 258
2.57899******************************************************************************************* PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
np+DL++hWA+HGtnkfvtir
CCG000795.1 259 NPIDLRTHWARHGTNKFVTIR 279
********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDALNMHN WGYYEPSYKE PLGLQWMPSM VDRDAKHFLP RRDPINIMIG ANGAYLPHDC 60
VVSDAPEHMN YMRDSWINRE KFLNILPPNP NYVVPPQTSG AYSMQMLQPP NSSRDERLSR 120
IEEPSVSNEG SQLKRRQVGG TSPKTPKAKK PRKPKDGNNN TVQRAKPAKK SVDVVINGID 180
MDISGIPIPI CSCTGTPQQC YRWGCGGWQS ACCTTNVSVY PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEAYNFANP IDLRTHWARH GTNKFVTIR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF144625 | 0.0 | EF144625.1 Populus trichocarpa clone WS01116_B19 unknown mRNA. |
| GenBank | EU130560 | 0.0 | EU130560.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
