PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000925.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 744aa    MW: 81893.6 Da    PI: 6.4267
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000925.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16450488240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  CCG000925.1 450 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 488
                  589**********************************96 PP
2TCR50.15.6e-16535573139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  CCG000925.1 535 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCEGCKNA 573
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18449490IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.259450575IPR005172CRC domain
PfamPF036381.1E-11452487IPR005172CRC domain
SMARTSM011144.4E-17535576IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11537573IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MDTPEKTQIT SPLSKFEDSP VFNYINSLSP IKPVKSINIA HTFHSLSFAS LPSVFTSPHV  60
NSHKETRFLK RHNYADLSKP EFSSENGNEA CSDERVAVDA AQLYDNSSEL LESFDPGVSI  120
REASVEPPSE HLKLAIELPR TLKYDCGTPD SDQTPRCGTQ TDTVSKSDGT IASLVPFTDV  180
ASHKDSPEAQ VHLAGLYKIE SKKEAAECDW ENFISDSADL LIFNSPIDAE GFKELFQKSP  240
NPVVGFCSSF SEVQKMQIVN PIAPGEQDEK EDPFTQPGET IELTQMDPTQ DNLAANKDLN  300
KYIISNPSKA VSNLHRGMRR RCLDFEMVGA RRKNIEDGSS SSSVVVQSDE KITYKNTQLV  360
PFKPSSDSSR CILPGIGLHL NALAINSRDS KKIKHETFSS SITLPGSAAS FHSPTSGQEL  420
DESLALASTE RDMDPSDNVV PHRLEGEAEA CKRCNCKKSK CLKLYCECFA AGVYCIEPCA  480
CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRSSEPA PEIGDESSKT PASARHKRGC  540
NCKKSSCLKK YCECYQGGVG CSLNCRCEGC KNAFGRKDGS ASVDMEDEHE DETDASEKNG  600
VDKTLQKAEI QNNDEQHPNS ALPTTPLRFS RPLVQLPYSS KGKPPRCFLG VGSSSGLYTG  660
QRYGKPNIFR PQWKFEKQFQ NVPEDEIPEI LRENHSPSSG IKTSPNSKRV SPPQSNLGSS  720
PGRRSGRKLI LQSIPSFPSL TPHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1745457214120Protein lin-54 homolog
5fd3_B3e-1745457214120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175860.0AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026909.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1ZHX50.0A0A2K1ZHX5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s15590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-171TESMIN/TSO1-like CXC 2