PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001005.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 693aa    MW: 75684.4 Da    PI: 8.0853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001005.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12641689247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+ eE++ l +avk++G+g+Wk+I +      + Rt+ ++k++w++ 
      CCG001005.1 641 KRWSLEEEDALREAVKKYGKGNWKLIWNSRRdvfQERTEVDLKDKWRNM 689
                      69*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.758635693IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-12636691IPR009057Homeodomain-like
SuperFamilySSF466892.58E-14637691IPR009057Homeodomain-like
SMARTSM007175.0E-8639692IPR001005SANT/Myb domain
PfamPF002491.8E-9641689IPR001005SANT/Myb domain
CDDcd116608.95E-19641691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MSSVAATTGR RSFDPDITRW VIEFILRQLQ IPVLTINKIL TNRHVPLSNT SPRFKKTLLL  60
RQIDADIEDG SVSEKTLDAI EMVEQIDRNE GDLIMDSMKD AYCAVAVECT VKYMLGNLQR  120
ARKGKFLEAV ERVWKKRVAG LKREGKSELV TGKLMQCSED MEVALKDDAV AKRWLKMNTR  180
NEAAEMVRIY LGEAVAVSGP VFVEMVARME MRGDGGLLCR KRGEGENEGV EVNLGGGELN  240
GLVEKIREGG GGENGVAGVN VGGGRVCVDV DAGEGCSRLA DGNLELGPAD MPAKESREGG  300
GGENGVMEVN VGGGRVCIDV NAGEGCSRSD DENLELGPAD KPAKKSSGGF FPPEIQKNNM  360
VRKHRHVVPI KRSKGPVKIT NTETAVGVVA SSLYDTITTD KVNTVRGKLI ASSMELRARV  420
KDPLPDTIKQ ADNIMAEMAG NLSNQGTSAE IQSGKGVDTV ISELARKIIN PDPPGKNQDG  480
KDAGSSFLSA NQTAVPSDQN QFGKDTDACN RSANHTVEPS AENLNQSEVD AANHFTNQTA  540
VPSIRNEKGK GVDAPNLSAN LSKKGNTGVT SCSHQNNVSK PSLMERNATA RTFQWDDSID  600
DSSEGTGDQM NRIHLDSPKR KAVSPLKKYE LARFAKRRKP KRWSLEEEDA LREAVKKYGK  660
GNWKLIWNSR RDVFQERTEV DLKDKWRNMT RYG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1618638KRKAVSPLKKYELARFAKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021017.10.0PREDICTED: uncharacterized protein LOC105123205 isoform X2
TrEMBLA0A2K1Y6380.0A0A2K1Y638_POPTR; Uncharacterized protein
STRINGPOPTR_0013s15060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-20MYB_related family protein