PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001019.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 416aa MW: 45469.4 Da PI: 9.9524

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001019.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	235	334	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk++Gasnv+kll ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+ael++++ CCG001019.1 235 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVYGASNVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGAISALQQQIQSLQAELSAIR 332 7**********************************************************************************************998 PP DUF260 99 ee 100 +e CCG001019.1 333 AE 334 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.774	234	335	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-39	235	332	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MLSSSSKLPQ KSLKLKQDDK KGYSKRVTRD VSMANLSTED YHVGASVAVP FTWESQPGTP 60 KIKFRENPLP PLTPPPSYFY NTPKRPTKKL SKSSLLDSIF PKRSTRKTNL PVSPASSSSS 120 SSSSSWLSSS WSATYSVPSS PMKISKSRGS YNGMSSPRQY IDTRKMMVDH DDQEHGNECE 180 YPVSTLCFGG IGRRASARER SEELGKRIKR ESDASSLMGR RQMLGPPVIL NTVTPCAACK 240 LLRRRCAEEC PFSPYFSPHE PQKFAAVHKV YGASNVSKLL MEVPESQRVD TANSLVYEAN 300 LRLRDPVYGS MGAISALQQQ IQSLQAELSA IRAEILNYKY REAAAATNII SSTHPALVSS 360 ATVSISTPSQ TLAPPPQPPP PSVVVSSSSS SSLYTTPTST SGYSTISSEN NVPYFD

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MLSSSSKLPQ KSLKLKQDDK KGYSKRVTRD VSMANLSTED YHVGASVAVP FTWESQPGTP  60
KIKFRENPLP PLTPPPSYFY NTPKRPTKKL SKSSLLDSIF PKRSTRKTNL PVSPASSSSS  120
SSSSSWLSSS WSATYSVPSS PMKISKSRGS YNGMSSPRQY IDTRKMMVDH DDQEHGNECE  180
YPVSTLCFGG IGRRASARER SEELGKRIKR ESDASSLMGR RQMLGPPVIL NTVTPCAACK  240
LLRRRCAEEC PFSPYFSPHE PQKFAAVHKV YGASNVSKLL MEVPESQRVD TANSLVYEAN  300
LRLRDPVYGS MGAISALQQQ IQSLQAELSA IRAEILNYKY REAAAATNII SSTHPALVSS  360
ATVSISTPSQ TLAPPPQPPP PSVVVSSSSS SSLYTTPTST SGYSTISSEN NVPYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	227	338	3	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	227	338	3	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970780	0.0	AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021036.1	1e-155	PREDICTED: LOB domain-containing protein 15-like isoform X1
Swissprot	Q8L5T5	4e-73	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	B9I6X0	1e-152	B9I6X0_POPTR; LBD family protein
STRING	POPTR_0013s15220.1	1e-153	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-64	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]