PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001042.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 209aa    MW: 24423.7 Da    PI: 7.7003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001042.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v ++G g+W++++r  g++R +k+c++rw +yl
      CCG001042.1 16 KGPWTPEEDKLLIEYVSLHGEGRWSSVSRWPGLNRNGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding52.88.8e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++++lG++ W+tIar+++ gRt++++k++w+++
      CCG001042.1  69 RGQITPQEEGIIIELHALLGNK-WSTIARYLP-GRTDNEIKNYWRTH 113
                      7888******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4031163IPR017930Myb domain
SuperFamilySSF466898.24E-3213110IPR009057Homeodomain-like
SMARTSM007176.2E-151565IPR001005SANT/Myb domain
PfamPF002492.3E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-231770IPR009057Homeodomain-like
CDDcd001671.35E-101863No hitNo description
PROSITE profilePS5129423.94764118IPR017930Myb domain
SMARTSM007171.7E-1368116IPR001005SANT/Myb domain
PfamPF002491.6E-1469113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2471117IPR009057Homeodomain-like
CDDcd001672.86E-973113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVARMGWGIP EQGWRKGPWT PEEDKLLIEY VSLHGEGRWS SVSRWPGLNR NGKSCRLRWV  60
NYLRPGLKRG QITPQEEGII IELHALLGNK WSTIARYLPG RTDNEIKNYW RTHSKKKETS  120
SQKQEKRKAQ ILKQEEEHQQ HLLQLEAGDV KMVNTIAHEK MPEAPEIMYP TLEDQCLPVM  180
SQDVVSWADS VVEDYNRLWG GFWNLDDHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2681171107B-MYB
1h8a_C1e-251611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021440.11e-154PREDICTED: transcription factor MYB48-like
SwissprotQ9LX822e-47MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2K2AT891e-109A0A2K2AT89_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13370.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-63myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]