PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001045.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9773.57 Da    PI: 10.8086
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001045.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.8e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+vavi+fs++gkl+eys+
  CCG001045.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVAVIVFSTKGKLFEYST 59
                 79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.21E-36261No hitNo description
SuperFamilySSF554553.92E-29261IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVAVIVFST KGKLFEYSTD  60
SRFFLSSCLT PLKLSPFLFL HVDLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19160161MEF2C
5f28_B7e-19160161MEF2C
5f28_C7e-19160161MEF2C
5f28_D7e-19160161MEF2C
6bz1_A8e-19160161MEF2 CHIMERA
6bz1_B8e-19160161MEF2 CHIMERA
6bz1_C8e-19160161MEF2 CHIMERA
6bz1_D8e-19160161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151531e-91AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021074.19e-36PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S73e-35AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1R3KTL26e-37A0A1R3KTL2_9ROSI; Transcription factor, MADS-box
STRINGPOPTR_0017s13400.15e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-36AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]