PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001099.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 375aa    MW: 41236.8 Da    PI: 5.0606
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001099.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.8e-062163440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 r+C+++     + +C+ ++ +lC+ C    H        H++v
  CCG001099.1 21 RVCDTCRAAACTVYCRADSAYLCAGCDARVHAAnrvasrHERV 63
                 79******99******************999556677778766 PP
2zf-B_box27.85.1e-0963108342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   r+C+ +e+ ++ l C+ +   lC  C   +H+       H++vp+
  CCG001099.1  63 VRVCEACERSPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 108
                  689*****************************66899999**9997 PP
3CCT68.51.8e-23306349144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG001099.1 306 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 349
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7361865IPR000315B-box-type zinc finger
SMARTSM003367.6E-81865IPR000315B-box-type zinc finger
CDDcd000213.40E-72165No hitNo description
PROSITE profilePS5011911.70461108IPR000315B-box-type zinc finger
PfamPF006432.5E-763108IPR000315B-box-type zinc finger
CDDcd000217.68E-964108No hitNo description
SMARTSM003363.9E-1066108IPR000315B-box-type zinc finger
PROSITE profilePS5101716.569306348IPR010402CCT domain
PfamPF062032.5E-17306348IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLKEESGGSG SGGVVVNNWA RVCDTCRAAA CTVYCRADSA YLCAGCDARV HAANRVASRH  60
ERVRVCEACE RSPAALLCKA DAASLCTACD ADIHSANPLA RRHQRVPILP ISGCPYGTQV  120
GPAAGETEDQ FMTQEGEETI GEEDEDEAAS WLLLNPAKNS NNQNNNGFVF SGEVDEYLDI  180
VEYNSCAENQ YSDQYNQQHY SVPPKSCGGD SVVPIQYGEG KDHQQQQQQQ YHNFQLGLEY  240
EPAKAAYSYD GSISQGVSMS SMDVGVVPES AMSEISISHQ SAPRGTIDLF SSPPIQMPSQ  300
LSPMEREARV LRYREKKKAR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD VDVEVDQMFS  360
STLMAETAYG IVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1477170.0EF147717.1 Populus trichocarpa clone WS0124_I04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021143.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
RefseqXP_011039781.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-147COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ6R3R20.0Q6R3R2_POPDE; CONSTANS-like protein CO1
STRINGPOPTR_0017s14410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-124CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]