PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001173.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 214aa MW: 23707.7 Da PI: 9.7898

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001173.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F ++ L H++ H CCG001173.1 60 YECQYCYREFANSQALGGHQNAH 82 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.72E-6	57	87	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-4	58	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.1E-5	60	84	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.676	60	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDSIGCLTKS NTITSNNTTL KLFGFNISEN NPTLPLDSSK SPSGSQEPET SFQSSKGRKY 60 ECQYCYREFA NSQALGGHQN AHKKERQLLK RAQMQATRRL ALASYVTIPN SMFSTFIPSP 120 PHLLDPAGVP VEAARQQHTQ SPPWFYKSYL GRMSRDGRYL NGPASIPGRC LDGKSNLVCS 180 EAGLRARAFP VSGFAREDVE PHHRHKGLGL DLHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021265.1	1e-160	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A2K1X6P1	1e-152	A0A2K1X6P1_POPTR; Uncharacterized protein
STRING	POPTR_0005s15460.1	1e-144	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3198	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	5e-13	C2H2 family protein