PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001200.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 216aa    MW: 24613 Da    PI: 4.4663
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001200.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC123.58.2e-39471502101
        NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  l +fw++q   i ++t  k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlr+wl++ ++krrtl+ +di+ ++ + d+ +fl  +
  CCG001200.1  47 LDQFWNQQlleIYSTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRAWLQTTSCKRRTLQCCDISRVIRQEDMLNFLNRV 144
                  789*****876445555555999*************************************************************************** PP

        NF-YC  96 vprdel 101
                  vp d++
  CCG001200.1 145 VPCDHK 150
                  *99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-267141IPR009072Histone-fold
PfamPF008081.4E-1570130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.5E-2970146IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDLNQSIELD PASEDPSPQE VENALPMNSS MLPCHQTTKE LQHKQNLDQF WNQQLLEIYS  60
TTASKSNNML PLARIKRVMK SDGDVKMISA ETPILFSKAC ELFILELTLR AWLQTTSCKR  120
RTLQCCDISR VIRQEDMLNF LNRVVPCDHK KEDEVTKCTE EMESLPDMQM PAFPFPDLNG  180
EVMMDENNHE DPQELMIKPP MPSSDFSSGS ASKSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-2854146394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090422e-89AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021303.11e-159PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2K1X6V11e-146A0A2K1X6V1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15090.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-37nuclear factor Y, subunit C2