PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001247.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 252aa    MW: 28342.6 Da    PI: 6.2512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001247.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-164189146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46
                     +g+WT+eEd ll ++v+++G g+W+ ++++      gRt++++k++w++
      CCG001247.1 41 KGAWTEEEDILLRKCVEKHGEGRWHEVPSRAAgrlSGRTANHVKNYWNS 89
                     79***************************9999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7213695IPR017930Myb domain
SuperFamilySSF466892.66E-133796IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-173895IPR009057Homeodomain-like
SMARTSM007177.0E-134093IPR001005SANT/Myb domain
PfamPF002491.2E-144189IPR001005SANT/Myb domain
CDDcd001671.09E-104390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MHVDVARNYK IELTKAILAR TNEVGIDHVR GTMVGSLGVR KGAWTEEEDI LLRKCVEKHG  60
EGRWHEVPSR AAGRLSGRTA NHVKNYWNSN QRKKVISSTD EVQSKPEAKS ITRDNIIKPQ  120
PWKFRNLFWL RGKSTPLINA GSQYGNDLCK PCYTTVSPPS DINEVDSLWW ESSLDNKEIN  180
QTINNSCLGS VSAAAYLESN ESHFVENNAP GGIKTGDVFY EQGQNCWSDI SLDADLWNLI  240
NTELDQQQPE GL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021396.11e-153PREDICTED: transcription factor MYB90-like
TrEMBLA0A2K1X7361e-141A0A2K1X736_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.12e-17production of anthocyanin pigment 1