PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001248.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 272aa    MW: 30689.9 Da    PI: 9.1842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001248.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-18956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g+W+ ++++ g++R++k+c++rw++yl
      CCG001248.1  9 KGAWTEEEDILLRKGVEKYGEGRWHQVPSKTGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding42.41.7e-1362110147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      rg ++ +E +l+++++k+lG++    W++Ia +++ gRt++++k++w++ 
      CCG001248.1  62 RGQFSVDEVDLIIRLHKLLGNRqvkMWSLIAGRLP-GRTANDVKNYWNTN 110
                      899********************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.897160IPR017930Myb domain
SuperFamilySSF466891.06E-276107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-23759IPR009057Homeodomain-like
SMARTSM007171.3E-16858IPR001005SANT/Myb domain
PfamPF002496.2E-17956IPR001005SANT/Myb domain
CDDcd001671.10E-121156No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2060115IPR009057Homeodomain-like
PROSITE profilePS5129417.83861115IPR017930Myb domain
SMARTSM007171.2E-1161113IPR001005SANT/Myb domain
PfamPF002492.7E-1262111IPR001005SANT/Myb domain
CDDcd001671.43E-965111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVSLLGVRKG AWTEEEDILL RKGVEKYGEG RWHQVPSKTG LNRCRKSCRL RWLNYLKPNI  60
KRGQFSVDEV DLIIRLHKLL GNRQVKMWSL IAGRLPGRTA NDVKNYWNTN LRKKVVSSTE  120
DAQTKPEAKS ITKDNIIKPR PRNLKNLCWL RAGKGTPYIN VASQYGDDLC QPYSTTALPP  180
SDTDEVERMW WESLLDDTEI NLTNNNSCLG SGSAVNQDPI KSLFVEDNAA GGIMMGDVFC  240
KQGQSSWAGI SFDSNLRNQS VTEIYQQGPE GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2291154105MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-22911527128MYB TRANSFORMING PROTEIN
1mse_C5e-2291154105C-Myb DNA-Binding Domain
1msf_C5e-2291154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021395.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV91e-59MY113_ARATH; Transcription factor MYB113
TrEMBLU5GI570.0U5GI57_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]