PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001249.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 209aa    MW: 23540.3 Da    PI: 4.8058
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001249.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09945147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd ll         + W++Ia +++ gRt++++k++w++ 
      CCG001249.1  9 KGAWTEEEDILLR--------K-WSLIAGRLP-GRTANDVKNYWNTN 45
                     6899999999995........4.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-11452IPR009057Homeodomain-like
PROSITE profilePS5129417.396450IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-13650IPR009057Homeodomain-like
SMARTSM007172.7E-7848IPR001005SANT/Myb domain
CDDcd001674.78E-101146No hitNo description
PfamPF002492.2E-62246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVSSFGVRKG AWTEEEDILL RKWSLIAGRL PGRTANDVKN YWNTNLRKKV VSSTREAQTE  60
PEPKSITKDN IIKPRPRNFK NLCWLRAGKG TPFINVGSQY GDDLCKPYST IAFPPSDTDE  120
VERMWWESLL DDTKINLTDS NSCQNSCLGS VSAANQEPIN STLFVEDNPP GGIMIGDVFS  180
DQGQNRWGDI SFDADLWRLI DAEIDQHKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021394.11e-137PREDICTED: transcription factor MYB90-like
TrEMBLU5GFP31e-122U5GFP3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-16myb domain protein 5