PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001251.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 253aa    MW: 28607.5 Da    PI: 8.5506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001251.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed ll d+v+++G g+W+ ++++ g++R++k+c++r ++yl
      CCG001251.1  9 KGAWTRDEDILLRDCVEKYGEGRWHQVSSKAGLNRCRKSCRLRCLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding27.76.5e-096299145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rgr +++E++l+++++     + W++Ia +++ gRt++++k++w 
      CCG001251.1 62 RGRYSEDEEDLIIKLH-----R-WSLIAGRLP-GRTANDLKNYWS 99
                     7999999999999987.....5.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.781460IPR017930Myb domain
SuperFamilySSF466897.11E-23698IPR009057Homeodomain-like
SMARTSM007176.8E-15858IPR001005SANT/Myb domain
PfamPF002496.1E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-191064IPR009057Homeodomain-like
CDDcd001672.23E-101156No hitNo description
SMARTSM007171.9E-661104IPR001005SANT/Myb domain
PROSITE profilePS5129411.70261106IPR017930Myb domain
PfamPF002497.6E-76299IPR001005SANT/Myb domain
CDDcd001671.82E-76498No hitNo description
Gene3DG3DSA:1.10.10.607.8E-1665106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVSSSGIRKG AWTRDEDILL RDCVEKYGEG RWHQVSSKAG LNRCRKSCRL RCLNYLKPGI  60
KRGRYSEDEE DLIIKLHRWS LIAGRLPGRT ANDLKNYWST SLRKKVVSGT REAQTTPEPK  120
AITKANIIKP RPHKFKSLCW LGGKGIPFFN GGFQYGYDLC KPCSTSALSP SDIFEVESMW  180
WESLLDDKEI NAPSNTGCLR SGSESDQEPI KSLLAEDSAP EGMRIRDVFC EQGQHCWSGN  240
PFDATDLWNL VNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1891064105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-18210620128MYB TRANSFORMING PROTEIN
1mse_C2e-1891064105C-Myb DNA-Binding Domain
1msf_C2e-1891064105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233940.0KP723394.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB transcription factor (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021397.10.0PREDICTED: transcription factor MYB90-like isoform X1
SwissprotQ9FNV96e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K1X7341e-167A0A2K1X734_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14450.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]