PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001318.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 435aa    MW: 48465.5 Da    PI: 5.8676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001318.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-154491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ l d+ k +G g W+ I r+ g++R++k+c++rw +yl
      CCG001318.1 44 KGAWTPLEDKMLMDYLKIHGEGKWSNIVRETGLKRCGKSCRLRWMNYL 91
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1697140146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
      CCG001318.1  97 RGNFSDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 140
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0553991IPR017930Myb domain
SuperFamilySSF466891.12E-2842138IPR009057Homeodomain-like
SMARTSM007172.4E-134393IPR001005SANT/Myb domain
PfamPF002492.2E-134491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-234598IPR009057Homeodomain-like
CDDcd001671.63E-104691No hitNo description
PROSITE profilePS5129425.83492146IPR017930Myb domain
SMARTSM007171.8E-1596144IPR001005SANT/Myb domain
PfamPF002491.2E-1497140IPR001005SANT/Myb domain
CDDcd001671.86E-1199142No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2499145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MHTIDNKSQE KAVPQSEDRE EAVRAGSEGE MGRKPGYSKD GLNKGAWTPL EDKMLMDYLK  60
IHGEGKWSNI VRETGLKRCG KSCRLRWMNY LRPNIKRGNF SDDEEDLIIR LHKLLGNRWS  120
LIAGRLPGRT DNEIKNYWHT TIAKKAQHRQ LLGQPKVDRK HIASGSQKRA ASNLKNQSTI  180
ESQCTTGMVA ATTTLQENTA QDHQDGIAMP KSTNSDLQHD MPKTYENESS SKGSQNGAAS  240
NFKNQSTIES QCTIGVVAAT PTLQENTAQD HQDGIAMEKS TSSNLQYHIP KTNENESSSK  300
GLASGEDDNS SNIMMDYDYM EDFSRILDSD FTRFSDIHDI MSTGQHSNNT IEVNGDHHGV  360
SINGCKSRET ADFVSINGCK SRETAEFPGK LLESDHWSSN KCVQADQGFD FMSLLSFLDS  420
TDDEWTADAL GTQIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-264214625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731501e-134FJ573150.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB097) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045022.10.0PREDICTED: transcription factor MYB28-like isoform X1
TrEMBLB9NA030.0B9NA03_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1659238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-56myb domain protein 3