PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001403.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 420aa MW: 47630.3 Da PI: 7.675

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001403.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.4e-32	205	259	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ CCG001403.2 205 KTRIRWTQDLHKKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRS 259 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.37	202	262	IPR017930	Myb domain
SuperFamily	SSF46689	9.68E-17	203	259	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	203	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-23	205	259	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	209	258	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-8	289	311	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MASRLQPAAV EAGCQQQNIS LERSPESIMS RFESPASAFY ATERYMRFPQ YDCQVGNYFC 60 SQYSNSYDSH VSSHQSSGAD YINSGEQADH NFGLRSTLES VVKPQVSCHK SFDKYDKGLS 120 SSSGNKLPSE HHNKFLDNPG VSLGNHFLVP FQGNQNRQVD YNPYNSPLSE LGRFNSREEK 180 RSPRFSLGGF PISSGKDLST TLSSKTRIRW TQDLHKKFVE CVNRLGGAEK ATPKAILKLM 240 DSDGLTIFHV KSHLQKYRSA RYMPGSSEGK AEKRTSIVDA SQFDVKTGFQ IREALEVQLD 300 VQRRLHEQLE VLVGLFPDDL LRGVVRFIQD PDDQFHLSII TNFAYIFLWQ IQKILQLRIE 360 EQGKQLKMMF DQQQKKTNSL LNNQNLNITS PDESTFSLED IDVSIVEGSN NNTHFPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MASRLQPAAV EAGCQQQNIS LERSPESIMS RFESPASAFY ATERYMRFPQ YDCQVGNYFC  60
SQYSNSYDSH VSSHQSSGAD YINSGEQADH NFGLRSTLES VVKPQVSCHK SFDKYDKGLS  120
SSSGNKLPSE HHNKFLDNPG VSLGNHFLVP FQGNQNRQVD YNPYNSPLSE LGRFNSREEK  180
RSPRFSLGGF PISSGKDLST TLSSKTRIRW TQDLHKKFVE CVNRLGGAEK ATPKAILKLM  240
DSDGLTIFHV KSHLQKYRSA RYMPGSSEGK AEKRTSIVDA SQFDVKTGFQ IREALEVQLD  300
VQRRLHEQLE VLVGLFPDDL LRGVVRFIQD PDDQFHLSII TNFAYIFLWQ IQKILQLRIE  360
EQGKQLKMMF DQQQKKTNSL LNNQNLNITS PDESTFSLED IDVSIVEGSN NNTHFPSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	205	262	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	205	262	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	205	262	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	205	262	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	205	262	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033232.1	0.0	PREDICTED: uncharacterized protein LOC105131785 isoform X2
TrEMBL	B9II05	0.0	B9II05_POPTR; Uncharacterized protein
STRING	POPTR_0016s04830.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-65	G2-like family protein