PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001407.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 373aa    MW: 39804 Da    PI: 9.0034
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001407.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.71.4e-4272147176
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                  +CqvegC++dls+ak+y++rhkvC++hsk+p v+v gl qrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+
  CCG001407.1  72 RCQVEGCKVDLSDAKTYYSRHKVCSMHSKSPRVIVGGLVQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 147
                  6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-3564134IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.35970147IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-4071150IPR004333Transcription factor, SBP-box
PfamPF031104.3E-3273146IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGSGSVTESA TSNATSPPAE SVNGLKFGKK IYFEDHVGVG APAKSGTGSS SSGSGSGSSR  60
KAQGGQHQQP PRCQVEGCKV DLSDAKTYYS RHKVCSMHSK SPRVIVGGLV QRFCQQCSRF  120
HLLPEFDQGK RSCRRRLAGH NERRRKPPSG SVLSARHGRF SPSLFDNSSR AGGLLVDFSA  180
YPRHTGRDGW PAPRSSELAP GNDTAATGRS ISHMWQINSQ NPPSNLCLQG STGGTGLFSS  240
GIPPGECFTG VAVSDSSCAL SLLSNQPWGS TNRASSLAVN DLFSAEEAPV VQSTATHGAA  300
VNQYPIPWSF KSNEGSNSSH EMCPDLGLGQ ISLPLSSQLP GQLEQSQQNR RQYMDLEHSR  360
AYDSSTQHIH WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30731461184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033246.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2K1XAV40.0A0A2K1XAV4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-59squamosa promoter binding protein-like 9