PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001486.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 251aa    MW: 26354.2 Da    PI: 8.6749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001486.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001879101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k Fs+   L  H  +H
  CCG001486.1  79 YKCSVCNKAFSSYQALGGHKASH 101
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.006779101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74179106IPR007087Zinc finger, C2H2
SuperFamilySSF576677.15E-1079154No hitNo description
PfamPF139123.9E-1379103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-479101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139122.6E-11131156IPR007087Zinc finger, C2H2
SMARTSM003551.7132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245132154IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALEALNSPT TAAPFNYEET WIKRKRSKRP RSESPSTEEE YLALCLIMLA RGGSTAATAK  60
KTASASPAPP QPPTSDLSYK CSVCNKAFSS YQALGGHKAS HRKSSSESTV ASATENPSTS  120
TTTTTTTSGR THECSICHKT FLTGQALGGH KRCHYEGTIG GNNSSSASAA ITTSDGGAVG  180
GGGVSQSKSQ RSGGGFDFDL NLPALPEFEG PRISKPEPCG DQEVESPLPG KKPRLMFSLK  240
QERTDMGSSQ I
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453170.0EF145317.1 Populus trichocarpa clone WS01123_D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012430.10.0PREDICTED: zinc finger protein ZAT10
TrEMBLA0A2K2C5R11e-143A0A2K2C5R1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30260.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-33salt tolerance zinc finger