PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001751.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 203aa    MW: 22688.5 Da    PI: 6.1506
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001751.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.3e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC++C ++ H
  CCG001751.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                 6**************************998 PP
2zf-B_box26.71.1e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  CCG001751.1 52 DVPRCDICEKAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                 5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
CDDcd000211.48E-6345No hitNo description
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
PfamPF006436.9E-6441IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735196IPR000315B-box-type zinc finger
SMARTSM003363.2E-105196IPR000315B-box-type zinc finger
PfamPF006435.0E-65285IPR000315B-box-type zinc finger
CDDcd000212.47E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRILCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
KAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGC TEEQGQQPLD  120
DYETRRDQNQ PPKLTARENQ QNHRASPVPT VENNTDSDGK MDNKLIDLNA RPQRVHGKNS  180
TDQENHESSS LAPFGFFKGE PQK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1457661e-172EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037202.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_011037203.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_011037204.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_011037205.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_011037206.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_011037207.11e-151PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM52e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9H0Y01e-145B9H0Y0_POPTR; DBB family protein
STRINGPOPTR_0004s16950.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-86DBB family protein