 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG001760.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 275aa MW: 30600.8 Da PI: 10.0334 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG001760.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 335.1 | 1.9e-102 | 1 | 275 | 24 | 301 |
GAGA_bind 24 lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqled 121
+++++m+++ erd++irernlal+ekk+a+a+rd+a +qr+kal er+kal+erdn+l++++ +en++ + p + ++ +g+k i + + ++++
CCG001760.1 1 MNKKIMTILIERDDAIRERNLALAEKKEALAARDEAIQQREKALVERDKALMERDNALASIQCRENAM--NYPLSGGSQRGSKRIPHPVY-HSSDMS- 94
6899**************************************************************85..5678889999*****97766.555555. PP
GAGA_bind 122 savelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGa 218
+a + e++ ++alp+++ + e+ +++++k+++++k k ak++ k +++s++ +k+ +d ++ k e++s+d++ln +++De+t+ +PvCsCtG+
CCG001760.1 95 EALDSGEMHVTNALPLSSVPAENAKSRQTKRSKENKAVGLKAAKSPWKGNRVSEDLNKQGASDgKKIKVEWDSQDVGLNLINFDETTMTAPVCSCTGV 192
567789************999999999999888888877777777777666666655555555689******************************** PP
GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+rqCYkWG+GGWqSaCCttt+S yPLP+++++r aR++grKmS+++f++lL++LaaeG+dls p+DLkd+WA+HGtn+++ti+
CCG001760.1 193 PRQCYKWGSGGWQSACCTTTLSSYPLPQMPNKRRARVGGRKMSGNVFTRLLSRLAAEGHDLSIPLDLKDYWARHGTNRYITIK 275
**********************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MNKKIMTILI ERDDAIRERN LALAEKKEAL AARDEAIQQR EKALVERDKA LMERDNALAS 60
IQCRENAMNY PLSGGSQRGS KRIPHPVYHS SDMSEALDSG EMHVTNALPL SSVPAENAKS 120
RQTKRSKENK AVGLKAAKSP WKGNRVSEDL NKQGASDGKK IKVEWDSQDV GLNLINFDET 180
TMTAPVCSCT GVPRQCYKWG SGGWQSACCT TTLSSYPLPQ MPNKRRARVG GRKMSGNVFT 240
RLLSRLAAEG HDLSIPLDLK DYWARHGTNR YITIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU130559 | 0.0 | EU130559.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
