PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001965.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 469aa    MW: 51996 Da    PI: 6.8809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001965.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-18232282256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  CCG001965.1 232 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDNAEDAALAYDREAFKLRGE 282
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.03E-32231291No hitNo description
PROSITE profilePS5103222.471232289IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22232290IPR016177DNA-binding domain
SMARTSM003807.0E-39232295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31232290IPR001471AP2/ERF domain
PfamPF008473.1E-11233282IPR001471AP2/ERF domain
PRINTSPR003676.3E-10233244IPR001471AP2/ERF domain
PRINTSPR003676.3E-10255271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAAAKNNFGK SKKGVVDVTR KMTMEQDWQL DRGKKEADVG FERRQWKPVF GEAFLSDRPL  60
KKICSPERQE KIQSSASLAH QIPSCFSVSS SSASTLSLNP PSSSPSPMSS SSSRLVFPFA  120
FEGSNQHIQC PQQFRTNPSL PIFRPLSQAA QNQQQMISFG HSQQNGIAYP SFFAGGLPMA  180
DHQQQQQQQL FQYWSDALNL SPRGRMMMMN KLGPDGRPLF RPPIQPINTR KLYRGVRQRH  240
WGKWVAEIRL PRNRTRLWLG TFDNAEDAAL AYDREAFKLR GENARLNFPE LFLNKDKATS  300
TVPSSTVSSP PTPDQSLKPK QAQEGLHLQA ETISPPVLPP QPPEQPPGDN PDDDSWMGSS  360
GATVSDEIQA VAEGSSAGEG ISGSQELGWG DMEEAWYNAI QAGWGPGSPV WDDLDSTNNL  420
LLQSHLPFVN PNQQQFNDSC VLQDNMGSAS SSSSSSFFPT KSYFLKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20231289160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559420.0EF155942.1 Populus trichocarpa RAP2-like protein (RAP2L1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045500.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
RefseqXP_011045501.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA9PL910.0A9PL91_POPTR; RAP2-like protein
TrEMBLB9I5K40.0B9I5K4_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-50ERF family protein