PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002043.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 209aa    MW: 23440 Da    PI: 9.9854
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002043.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP28.54e-0938694678
                 TSSEEETTT--SS--S-STTTT-------S--- CS
          SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                 C rfh +sef+ ekrsCrr La+    rrk+++
  CCG002043.1 38 C-RFHVVSEFEGEKRSCRRALAERRGTRRKSSQ 69
                 4.9*********************999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511418.964167IPR004333Transcription factor, SBP-box
PfamPF031101.1E-63566IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.51E-73572IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.0E-43554IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MALNINESIH AERQFAWNDD CRNGLLMRLK VGLACYLCRF HVVSEFEGEK RSCRRALAER  60
RGTRRKSSQD SVSRNASEGI ISDFRCTYQL PWPNLNPGST ILPVPLEPNL NPRSTILPDP  120
PAPNSNTDFG TLLDHSQPKI DGKSSFLPFI FLFRLFSTNC VPLCCHLMRI STILGRAIRR  180
RILTQGAYNI KPGKVSLVVW LHGASTSSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1XGQ31e-79A0A2K1XGQ3_POPTR; Uncharacterized protein