PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002207.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 176aa    MW: 19683.4 Da    PI: 10.3797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002207.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-203483255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  CCG002207.1 34 HFRGVRKRP-WGRFAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 83
                 69*******.**********883....5999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-303391IPR001471AP2/ERF domain
PROSITE profilePS5103221.5623491IPR001471AP2/ERF domain
SMARTSM003801.7E-333497IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-213491IPR016177DNA-binding domain
PfamPF008471.1E-123483IPR001471AP2/ERF domain
CDDcd000181.08E-283490No hitNo description
PRINTSPR003676.6E-103546IPR001471AP2/ERF domain
PRINTSPR003676.6E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAGDAWRRRN DTVTTTLSLA APSTPAAENE PQRHFRGVRK RPWGRFAAEI RDPWKKTRRW  60
LGTFDTAEEA ALAYDEAARS LRGPKARTNF FHRDHLAPLP FLQTTVVGAG GLKIWCSPVF  120
LSDGVSRVAA PTAVAPVRSE YQGYKIESVN ENVGLVLNEE KQRPLLFDLN LPAPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-203390462ATERF1
3gcc_A7e-203390462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028745.11e-127PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A3N7ENU21e-113A0A3N7ENU2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04430.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-22erf domain protein 9