PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002241.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 239aa    MW: 26436.7 Da    PI: 8.0657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002241.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16109158355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g ++AeIrd + ng  +r++lg+f+t e Aa a+++a+++l g
  CCG002241.1 109 YRGVRNRP-WGTYAAEIRDSTRNG--ARVWLGTFDTGEAAALAYDQAALSLQG 158
                  9****777.**********44465..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.286108166IPR001471AP2/ERF domain
SMARTSM003803.6E-32108172IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20108168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-29108167IPR001471AP2/ERF domain
PfamPF008471.7E-11109158IPR001471AP2/ERF domain
PRINTSPR003673.0E-9109120IPR001471AP2/ERF domain
CDDcd000184.67E-17109167No hitNo description
PRINTSPR003673.0E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDHSFFNNPN QEFSTSPPFG LLDPSWDKLP FNLHDFSPFN SDDSEGNQET LPSDVPLTEA  60
KASTHSIASD VPPNIAKNDL PQLSSSKEIR EQEATPKAKK NIPTRKKTYR GVRNRPWGTY  120
AAEIRDSTRN GARVWLGTFD TGEAAALAYD QAALSLQGSK AVLNFPIEQV RKSLEELKCG  180
FTDWCSPAEA LKKTHSKRKP MSGKRKGKGL ATKEVLVLED LGADYLETLL SSCERGIPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-25107168465ATERF1
3gcc_A1e-25107168465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028796.11e-178PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2K2BD471e-154A0A2K2BD47_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04010.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1713338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-41ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]