PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002276.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 133aa    MW: 15154 Da    PI: 7.255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002276.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-081356344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W  +a+ +g  ++++++k ++
      CCG002276.1 13 SWTAKQNKLFEKALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 56
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.603964IPR017884SANT domain
SMARTSM007178.2E-81062IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-121268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-41258IPR009057Homeodomain-like
PfamPF002493.7E-61356IPR001005SANT/Myb domain
CDDcd001675.19E-71360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSYFTSSNGF GSSWTAKQNK LFEKALAVYD KDTPDRWQNV AKAVGSKSAE EVKRHYDRLV  60
EDLVYIESGQ VPLPNYKPTG SSGRGLVEEQ SEHFLVTTYH NIMHLTHVQE MNIHIVIDYP  120
SKLKGHEQAQ TKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33482179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028852.14e-62PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1737e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K2BCW95e-49A0A2K2BCW9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03640.18e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-37RAD-like 6