PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002325.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

DBB

Protein Properties

Length: 309aa MW: 34261.4 Da PI: 6.5705

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002325.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.7e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++ +e++ fC+ ++ lC++C H+ H+ CCG002325.1 4 QCDVCNTEEASVFCTADEAALCDTCDHRVHHAnklaskHQ 43 7***************************964446666676 PP
2	zf-B_box	25.5	2.8e-08	56	92	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ lfC++++ lC+dC +H Ht CCG002325.1 56 PICDICQEKRAFLFCQQDRAILCRDCDGPIHTAneHT 92 79*************************9999546665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.263	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.61E-7	3	47	No hit	No description
Pfam	PF00643	5.1E-6	4	43	IPR000315	B-box-type zinc finger
SMART	SM00336	6.4E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.883	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-14	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	2.79E-10	56	100	No hit	No description
Pfam	PF00643	7.8E-7	56	92	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MKIQCDVCNT EEASVFCTAD EAALCDTCDH RVHHANKLAS KHQRFSLLHP SSKNFPICDI 60 CQEKRAFLFC QQDRAILCRD CDGPIHTANE HTQKHNRFLL TGVKLSATSA VYISSSSVTN 120 SGGHLVPDSK SQQQQQQQSI KKPVFDAPVN SNPPTVPSTL STNTVANKGG YNLVTNEGFG 180 STTTSTISEY LMETLPGWHV EDFLDSSTTP FGFCKIDDVL LPFMDTHDLE SNMSSFSPES 240 LGLWVPQAPS TPFTSRQYYF PQVVGQSGFK EIKETTNMKA DRRLADDVFT VPQISLPTSI 300 SSKRSRPLW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208480	0.0	AC208480.1 Populus trichocarpa clone JGIACSB1081-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028947.1	0.0	PREDICTED: B-box zinc finger protein 21-like
Swissprot	Q9LQZ7	5e-89	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	B9GRG8	0.0	B9GRG8_POPTR; Uncharacterized protein
STRING	POPTR_0002s02970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-85	salt tolerance homolog2

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]