PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002363.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 403aa    MW: 44063.1 Da    PI: 9.221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002363.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014170191323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ Cg++F+  ++L+ H+++ H
  CCG002363.1 170 CTQCGEVFPKIESLELHQKVrH 191
                  *******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556168196IPR007087Zinc finger, C2H2
PROSITE patternPS000280170191IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-25193399No hitNo description
Gene3DG3DSA:3.90.228.103.9E-12195399IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAALTFLQEH KETRQKQPSR HKRKLQKEKE KQPSSWDQIK NLLTCKQIEG SRVHDPSKNP  60
NGYSKLGSSC SSICSFKDVV HGNTRVVHRA DNSPESSTLG QETGLLSRKG VSTGSSSTRS  120
LMSSGRSNSG VTCSSSSRGM QFRKLSGCYE CHMIVDPSRY PSARTTISAC TQCGEVFPKI  180
ESLELHQKVR HAVSELGPED SGRNIVEIIF KSSWLKKDNP ICKIERILKV HNTQRTIQRF  240
EDCRDAVKTR ALNSTKKNPR CAADGTELLR FHCTTLTCSL GSLGSSSLCR SIPVCGVCTI  300
IRHGFQGIEG KGVSTTASSG RAHDSLWGCT DGRRAMLVCR VIAGRVKRVA EDAQPPEEDG  360
ASAGSYDSVA GCAGIYSTLE ELSVFNPRAI LPCFVVIYKA LES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2769660.0GU276966.1 Populus balsamifera isolate FBK13 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769670.0GU276967.1 Populus balsamifera isolate FBK13 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769680.0GU276968.1 Populus balsamifera isolate FRE01 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769690.0GU276969.1 Populus balsamifera isolate FRE01 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769700.0GU276970.1 Populus balsamifera isolate GAL12 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769710.0GU276971.1 Populus balsamifera isolate GAL12 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769720.0GU276972.1 Populus balsamifera isolate GIL14 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769730.0GU276973.1 Populus balsamifera isolate GIL14 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769740.0GU276974.1 Populus balsamifera isolate INU03 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769750.0GU276975.1 Populus balsamifera isolate INU03 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769760.0GU276976.1 Populus balsamifera isolate MGR10 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769770.0GU276977.1 Populus balsamifera isolate MGR10 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769780.0GU276978.1 Populus balsamifera isolate NWL07 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769790.0GU276979.1 Populus balsamifera isolate NWL07 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769800.0GU276980.1 Populus balsamifera isolate POR11 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769810.0GU276981.1 Populus balsamifera isolate POR11 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769820.0GU276982.1 Populus balsamifera isolate RNA13 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769830.0GU276983.1 Populus balsamifera isolate RNA13 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769840.0GU276984.1 Populus balsamifera isolate WHR03 haplotype A C2H2 type zinc finger family protein gene, partial sequence.
GenBankGU2769850.0GU276985.1 Populus balsamifera isolate WHR03 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029003.10.0PREDICTED: uncharacterized protein LOC105128859
TrEMBLA0A2K2ALL90.0A0A2K2ALL9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-158C2H2-like zinc finger protein