PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002551.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 687aa    MW: 77093.6 Da    PI: 7.0984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002551.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-17188234148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd +l+++v+q G + W  +a++++ gR +kqc++rw+++l
      CCG002551.1 188 KGQWTTEEDRILIQLVEQNGVRKWCHVAQMLP-GRIGKQCRERWHNHL 234
                      799*****************************.*************97 PP
2Myb_DNA-binding55.81e-17240282145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W+ eEd+ l++a+ +lG++ W+ Ia++++ gRt++++k++w+
      CCG002551.1 240 KDTWSVEEDKVLIQAHSELGNR-WAEIAKKLP-GRTENSIKNHWN 282
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.58183238IPR017930Myb domain
SuperFamilySSF466893.09E-30186281IPR009057Homeodomain-like
SMARTSM007171.1E-16187236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-24189240IPR009057Homeodomain-like
PfamPF139217.3E-17191249No hitNo description
CDDcd001677.17E-15191234No hitNo description
PROSITE profilePS5129421.846239289IPR017930Myb domain
SMARTSM007171.9E-17239287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-21241287IPR009057Homeodomain-like
CDDcd001672.92E-13242285No hitNo description
SMARTSM004322.2E-4460521IPR002100Transcription factor, MADS-box
CDDcd001206.13E-13461519No hitNo description
PfamPF003191.7E-13474518IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.297474522IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-12474539IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MFLSNKPYMK EDYFPFETVP ASPSSKGFLQ DFDHLDDARD SQFHANGSAS NPFFGVQTGS  60
DFDSFDAFPY GLSSDIDFYD YECKPFVGNI NGGGGHGHGQ VNEDLQSGAY LDLSSQRNSI  120
DDIGSNQDHV SLNFDEINPV SFVVPDEVSC VSAASNECKR KMGLNKTRAP LPSARKTWKG  180
PKKNSIVKGQ WTTEEDRILI QLVEQNGVRK WCHVAQMLPG RIGKQCRERW HNHLRPNIKK  240
DTWSVEEDKV LIQAHSELGN RWAEIAKKLP GRTENSIKNH WNATKRKQYS KRKCRPKYPR  300
ATLLQDYIKS LNLDSGITGR GLGITTASTD IVLGNDTRMK APELLPRDLV LFKDNGDGLV  360
PNYSFNEVAD FDIHEKIFRE GCSVDSILDE LPCDHSVAHE KRLEMNVPEP EVTPFMGFEV  420
KKEVDLVEMI SQSKIAIAHS STLPLFIFKY AIATKSRKTA TRREKFMKKI NEGNKVTQAV  480
SFSKRKPTLK KKVEELETLC AVTICMVCFG PDGTVETYPE NAAEVKREIG FYKGLHAMQK  540
REFNLLGYLE NVKGKLGLKR QKVRRKKLEA LAESFSNQIE GLSGDAFLHF IEAVEKKLMG  600
LRGKISDLLS IRGDKGKADA HGSDNSDHAL VPCDRAVPEP IDANNCIFMV ENKCANPVVD  660
EDLAECFCDS ELLKLAGIEC QPITPEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-431862882104C-Myb DNA-Binding Domain
1msf_C3e-431862882104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028719.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9IES70.0B9IES7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-97myb domain protein 98