PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002572.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 184aa    MW: 20956.3 Da    PI: 10.089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002572.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-101463654
                 HHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                 + +E++RR ++++  ++L +l+P+ + k+++  ls  + Le+A  YIk++
  CCG002572.1 14 KTVEKNRRVHMKDLCFKLASLVPHHFfKPSKDMLSQQDQLELAACYIKQM 63
                 679*********************663666666***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.18E-5668No hitNo description
PROSITE profilePS508889.426863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-101282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-101287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKRSNSETSK LDRKTVEKNR RVHMKDLCFK LASLVPHHFF KPSKDMLSQQ DQLELAACYI  60
KQMRERVEKL KRAKEQAITT IQTSRSSMAS MMIGLRLPVI ELRDFGSSIE VVLVSGLNKN  120
FMFYEVISVL SDEGAEVVSA SYSTVGDKVF HTIHAQNFQS WCGDFKSVGK IARTNFLGVC  180
IWGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028585.11e-111PREDICTED: uncharacterized protein LOC105128559
TrEMBLB9IEQ21e-106B9IEQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08580.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-31bHLH family protein