PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002815.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 284aa MW: 31577.5 Da PI: 10.3076

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002815.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	317.9	3.2e-97	1	284	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 md+d+s + rn+gyyep+ +k nlglqlms +++e+ + + +++ ++ ++++d m++ +r +++ + ++k++++l+ CCG002815.1 1 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSpTMPEKPFLGSRSAAIMTSMNGGFNHKDvgvsqpmhpMEY-MRGAWIGQ--------REKFINVLPG 88 99*************9.99*****945667776655555558999999*666666666666.55666665........899**8 PP GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeake.kkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184 +++ + v ++t+s++++q ++++ +++ e l++ e+a ++k+ + +kkrqr+k pk++kakk k+ ++++k + + + CCG002815.1 89 SHN-------YAAVFPETSSAHHMQV------FQPPYSTKD----EPLELAEEAGVVKKvNGPNKKRQRQKAPKSPKAKKGKRGPQVPKPEDTLSV-- 167 886.......78899***9999......344555333....234444455554441566778999**********8888877766666.. PP GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282 +r+++ kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iSvyPLP+s krrgaRiagrKmS gafkk+LekLa+eGyd+snp CCG002815.1 168 QRVRSAKKTAEIMINGINMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCISVYPLPMSMKRRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNP 265 79******************************************************************************************** PP GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301 +DL++hWAkHGtnkfvtir CCG002815.1 266 IDLRTHWAKHGTNKFVTIR 284 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	8.4E-112	1	284	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.1E-187	1	284	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDEDNSLNIR NWGYYEPTPV KGNLGLQLMS PTMPEKPFLG SRSAAIMTSM NGGFNHKDVG 60 VSQPMHPMEY MRGAWIGQRE KFINVLPGSH NYAAVFPETS SAHHMQVFQP PYSTKDEPLE 120 LAEEAGVVKK VNGPNKKRQR QKAPKSPKAK KGKRGPQVPK PEDTLSVQRV RSAKKTAEIM 180 INGINMDISV IPIPVCSCTG NPQQCYRWGC GGWQSACCTT CISVYPLPMS MKRRGARIAG 240 RKMSLGAFKK VLEKLAGEGY DFSNPIDLRT HWAKHGTNKF VTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982268	0.0	FJ982268.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) gene, complete cds.
GenBank	FJ982269	0.0	FJ982269.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035535.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_011035536.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_011035537.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-89	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	H1ZN52	0.0	H1ZN52_POPTR; BBR-BPC family protein
STRING	POPTR_0015s05200.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-89	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]