PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002816.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 284aa    MW: 31352.2 Da    PI: 9.8363
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002816.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind311.72.4e-9512841301
    GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 
                  md+d+s + rn+gyyep+  +k nlglql+s +++e+      + + +++ ++ +++rd          ++  rd+++ +        ++kll++l+ 
  CCG002816.1   1 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLLSpTMPEKPILGSRSAAIMTSMNGGFYHRDigisqplmpTEY-VRDAWIGQ--------REKLLNVLPG 88 
                  99***************9.99*********9456677766555555599999*******888888877777.78888888........7899****98 PP

    GAGA_bind  88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                  ++        +  vl++t+s +++++     ++++     + e l  + +eea  ++k +  +kk+qr+k pk+++akk     +++k + ++++  +
  CCG002816.1  89 NHD-------YAAVLPETSSSHHMEM-----FQPPYLA--KDEPL--ELVEEAGVVEKVNGPNKKKQRHKGPKSPRAKKGMGGAQVPKPEGSPPT--Q 168
                  775.......78899**********9.....3333333..22222..234444455555666777899999*******99999999988888888..7 PP

    GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                  r++a kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iSvyPLP+stkrrgaRiagrKmS gafkk+LekLa+eGyd+snp+
  CCG002816.1 169 RARAAKKTAEIMINGINMDISVIPIPVCSCTGHPQQCYRWGCGGWQSACCTTCISVYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNPI 266
                  9************************************************************************************************* PP

    GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                  DL+ hWAkHGtnkfvtir
  CCG002816.1 267 DLRAHWAKHGTNKFVTIR 284
                  *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.0E-1851284IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-1091284IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDEDNSLNIR NWGYYEPTPV KGNLGLQLLS PTMPEKPILG SRSAAIMTSM NGGFYHRDIG  60
ISQPLMPTEY VRDAWIGQRE KLLNVLPGNH DYAAVLPETS SSHHMEMFQP PYLAKDEPLE  120
LVEEAGVVEK VNGPNKKKQR HKGPKSPRAK KGMGGAQVPK PEGSPPTQRA RAAKKTAEIM  180
INGINMDISV IPIPVCSCTG HPQQCYRWGC GGWQSACCTT CISVYPLPMS TKRRGARIAG  240
RKMSLGAFKK VLEKLAGEGY DFSNPIDLRA HWAKHGTNKF VTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822660.0FJ982266.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) gene, complete cds.
GenBankFJ9822670.0FJ982267.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035532.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_011035533.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE25e-85BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLU5FRS00.0U5FRS0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-87basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]