PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002829.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 1071aa    MW: 116020 Da    PI: 8.0006
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002829.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1186.4e-06412429118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C+  CH G+C pC
  CCG002829.1 412 CGMHQCKGVCHSGDCAPC 429
                  ****************** PP
2zf-NF-X118.15.9e-06508526119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H+C  lCH G CppC 
  CCG002829.1 508 CGQHSCDDLCHSGHCPPCL 526
                  ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.59E-6113184No hitNo description
PROSITE profilePS500168.556120181IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.317123179IPR001841Zinc finger, RING-type
PROSITE patternPS013590123178IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.15E-5212273No hitNo description
SMARTSM004380.039235253IPR000967Zinc finger, NF-X1-type
PfamPF014221.7237252IPR000967Zinc finger, NF-X1-type
CDDcd060089.26E-11280328No hitNo description
SMARTSM004380.0015290309IPR000967Zinc finger, NF-X1-type
PfamPF014220.0046292307IPR000967Zinc finger, NF-X1-type
CDDcd060084.08E-9344387No hitNo description
SMARTSM004380.0035354373IPR000967Zinc finger, NF-X1-type
PfamPF014220.0021354371IPR000967Zinc finger, NF-X1-type
CDDcd060089.63E-13402450No hitNo description
SMARTSM004388.2E-4412431IPR000967Zinc finger, NF-X1-type
PfamPF014226.9E-5412429IPR000967Zinc finger, NF-X1-type
SMARTSM00438220470504IPR000967Zinc finger, NF-X1-type
PfamPF0142218470481IPR000967Zinc finger, NF-X1-type
CDDcd060081.95E-7498541No hitNo description
SMARTSM004384.6E-4508527IPR000967Zinc finger, NF-X1-type
PfamPF014222.2E-4508525IPR000967Zinc finger, NF-X1-type
SMARTSM004380.063565583IPR000967Zinc finger, NF-X1-type
PfamPF0142292565581IPR000967Zinc finger, NF-X1-type
PfamPF0142243614640IPR000967Zinc finger, NF-X1-type
SMARTSM004380.21621642IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.3E-5853909IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1071 aa     Download sequence    Send to blast
MSFQPRNDRR DNNNNRSSRL PTQKWVPRGA NSSPAVDANT KPPSSSNSRY NGNGGGGAAH  60
GWSGTAHHRC NKGGMAVNAP RGHVGRPRKG IERSEKTREL NDPNLPQLAQ DIQEKLVKST  120
VECMICYDIV RRSVPIWSCS SCFSIFHLNC IKKWARAPTS VDLIAEKNQG FNWRCPGCQS  180
VQLTTLNDIR YVCFCGKRRD PPSDLYLTPH SCGEPCGKPL EKEAPGADGS KDDLCPHNCV  240
LQCHPGPCPP CKAFAPPRLC PCGKKIITTR CADRMSVVTC GNPCDKILEC WRHRCERICH  300
VGPCDSCQVL VNASCFCKKR TEVVLCGDMA MKGEVKAEDG VFSCNSTCGK MLGCGNHMCD  360
ETCHPGLCGD CELMPARVRS CYCGKTSLQE ERKSCLDPIP TCTQICGKSL PCGMHQCKGV  420
CHSGDCAPCL VSVTQKCRCG STSQTVECYK ITSENEKFLC EKPCGRKKNC GRHRCSERCC  480
PLSSSNNQFS GDWDPHFCQM ACGKKLRCGQ HSCDDLCHSG HCPPCLETIF TDLTCACRRT  540
SIPPPLPCGT PPPSCQLSCS VPQPCGHPAS HSCHFGDCPS CLVPVAKECV GGHVILGNIP  600
CGSRDIRCKG NVTCGAPKRD CRHTCTALCH PHAPCPDVRC EFLVTISCSC GRMTASVPCD  660
AGGSNGGYND TVLEASILHK LPASLQPVES TGKKIPLGQR KLTCDDDCAK LERKRVLADA  720
FDITPPNLEA LHFGENSAVT ELIGDLYRRD PKWVLAVEER CKYLVLGKSR GTTSGLKIHV  780
FCPMLKDKRD AVSLIAERWK LAIYSAGWEP KRFFVVHATS KSKPPPRVIG IKGTTTLSSH  840
PPVFDVFVDM DPRHVVSFLD LPREADISSL VLRFGGECEL VWLNDKNALA VFNDPARAAT  900
AMRRLDHGSL YHGASVVPQN TGASVASPAN NAWAVAGTAM EGAVAALKGT SWKKAVVREN  960
GCKKDSWGGE EWSDDGSADV QASAWKGKEA PIVASINRWS VLDSEKADSS SAASVKMEDP  1020
AKQVAGSLSS SGLESNPSTS NTSRQPAMQS GGVSREEDLS VVVDDWEKAY D
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035557.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3N7G0180.0A0A3N7G018_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1