PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002996.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 198aa    MW: 21672.8 Da    PI: 8.2556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002996.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174365123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C +C+++F ++  L  H++ H
  CCG002996.1 43 FPCLYCPRRFYTSQALGGHQNAH 65
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.55E-64070No hitNo description
PROSITE profilePS5015710.6164370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADPSIFNFL NHQHQQYPSS SSSSKPTKKS STSLPQPSSS RHFPCLYCPR RFYTSQALGG  60
HQNAHKRERA ALRRNNTTLN TSISTDPSLI IPSSFLNHNL PPPASTPAVP FLNQYHRYHQ  120
QALDHPMMIT NYQFPAPPST NGVYVSAPHY GGFYGVSAAA ASLDHDIGSG SGSGYDLSTS  180
TDNDDPNDPT NIDLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045772.11e-143PREDICTED: zinc finger protein 7-like
TrEMBLB9GFF81e-124B9GFF8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33210.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-17C2H2 family protein