PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003148.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family EIL
Protein Properties Length: 684aa    MW: 77370 Da    PI: 5.778
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003148.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3195.64.3e-60401571123
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  +el++rmw+d+mll+rlke+ k+     e+ ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWkek
  CCG003148.1  40 DELERRMWRDRMLLRRLKEQGKN----TEV-VDHAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRGWWKEK 132
                  79*****************9997....566.999**************************************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3  99 vefdrngpaaiskyqaknlilsges 123
                  v+fdrngpaaiskyqa++ i+++ s
  CCG003148.1 133 VRFDRNGPAAISKYQADHSIPGKIS 157
                  ********************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.0E-5640156No hitNo description
SuperFamilySSF561121.08E-78156215IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.9E-24166304No hitNo description
CDDcd051173.37E-114175465No hitNo description
PROSITE profilePS5001147.552175466IPR000719Protein kinase domain
SMARTSM002209.6E-89175466IPR000719Protein kinase domain
PROSITE patternPS001070181206IPR017441Protein kinase, ATP binding site
SuperFamilySSF561121.08E-78243481IPR011009Protein kinase-like domain
PfamPF000696.4E-57256466IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.6E-59305494No hitNo description
PROSITE patternPS001080327339IPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:1.10.238.102.1E-37512673IPR011992EF-hand domain pair
SuperFamilySSF474735.7E-34512672IPR011992EF-hand domain pair
PRINTSPR004504.7E-9522541No hitNo description
PROSITE profilePS502229.185560595IPR002048EF-hand domain
SMARTSM000541.5564592IPR002048EF-hand domain
CDDcd000518.08E-7567626No hitNo description
PfamPF132020.039568584IPR002048EF-hand domain
PRINTSPR004504.7E-9568589No hitNo description
PROSITE patternPS000180573585IPR018247EF-Hand 1, calcium-binding site
PRINTSPR004504.7E-9592611No hitNo description
PROSITE profilePS5022213.035596631IPR002048EF-hand domain
SMARTSM000540.0011600628IPR002048EF-hand domain
PfamPF134994.0E-14600668IPR002048EF-hand domain
CDDcd000514.40E-12601668No hitNo description
PROSITE patternPS000180609621IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022214.29638673IPR002048EF-hand domain
SMARTSM000542.0E-6642670IPR002048EF-hand domain
PROSITE patternPS000180651663IPR018247EF-Hand 1, calcium-binding site
PRINTSPR004504.7E-9658678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009608Biological Processresponse to symbiont
GO:0009877Biological Processnodulation
GO:0046777Biological Processprotein autophosphorylation
GO:0004683Molecular Functioncalmodulin-dependent protein kinase activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005524Molecular FunctionATP binding
GO:0009931Molecular Functioncalcium-dependent protein serine/threonine kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MGFCNNLDFF SAPGEMDAVP EREPGATIEE DYSDEEMDVD ELERRMWRDR MLLRRLKEQG  60
KNTEVVDHAK HRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI IPEKGKPVSG  120
ASDNLRGWWK EKVRFDRNGP AAISKYQADH SIPGKISFRE IVFMGQETRK LSDEYEVSDI  180
LGRGGFSVVR RGILKTSGDR RQVAIKTLKR LGPSTPSGIP RSRGDGERSI SSFKFPTWRQ  240
VSVSDALLTN EILVMRKIVE NVSPHPNVID LYDVYEDQNG VHLVLELCSG GELFDRIVAR  300
DRYSESEAAA VVRQIAEGLG ALHRANIVHR DLKPENCLFL NENDDSTLKI MDFGLSSVEE  360
FTDPVVGLFG SIDYVSPEAL SQGRISSKTD MWSLGVILYI LLSGYPPFIA QSNKQKQQVI  420
LAGDFTFYEK TWKNITSSAK QLITDLLQVD PERRPSAHDV LNHPWVIGDS AKEEQMDPEI  480
VSRLQSFNAR RKFRAAAIAS VWSSTIFLRT KKLKSLLGSH DLKEDEIEKL RLHFSKLCAK  540
GDNATLSEFE EVLKAMNMSL LIPMAPRIFD LFDNNRDGTV DMREILCGFS SLRNSQGDDA  600
LRLCFQMYDT DRSGCITKEE VASMLRALPE DCLPADIAEP GKLDEIFDRM DANSDGKVTF  660
DEFKAAMKRD SSLQDVVLSS LRQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mvf_A9e-7017066954498Calcium-dependent protein kinase 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489513RRKFRAAAIASVWSSTIFLRTKKLK
Functional Description ? help Back to Top
Source Description
UniProtDuring nodulation, plays a central role in bacterial infection and contributes to nodule organogenesis (PubMed:22874912). Protein kinase that recognizes the calcium spiking induced by Nod factors and translates this signal to components controlling nodulation and mycorrhizal infection responses. May phosphorylate the NSP1 protein (PubMed:14963335, PubMed:15070781). Required in epidermal and cortical cells to promote infection thread (IT) formation in root hairs (PubMed:22874912). {ECO:0000269|PubMed:14963335, ECO:0000269|PubMed:15070781, ECO:0000269|PubMed:22874912}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Small up-regulation in nodules. {ECO:0000269|PubMed:14963335}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013002.10.0PREDICTED: calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like
SwissprotQ6RET70.0CCAMK_MEDTR; Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3
TrEMBLA0A2K1YZT30.0A0A2K1YZT3_POPTR; Uncharacterized protein
STRINGXP_002512205.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF882634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20770.14e-61EIL family protein
Publications ? help Back to Top
  1. Lévy J, et al.
    A putative Ca2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses.
    Science, 2004. 303(5662): p. 1361-4
    [PMID:14963335]
  2. Mitra RM, et al.
    A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(13): p. 4701-5
    [PMID:15070781]
  3. Messinese E, et al.
    A novel nuclear protein interacts with the symbiotic DMI3 calcium- and calmodulin-dependent protein kinase of Medicago truncatula.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 912-21
    [PMID:17722695]
  4. Rival P, et al.
    Epidermal and cortical roles of NFP and DMI3 in coordinating early steps of nodulation in Medicago truncatula.
    Development, 2012. 139(18): p. 3383-91
    [PMID:22874912]
  5. Rival P,Bono JJ,Gough C,Bensmihen S,Rosenberg C
    Cell autonomous and non-cell autonomous control of rhizobial and mycorrhizal infection in Medicago truncatula.
    Plant Signal Behav, 2013. 8(2): p. e22999
    [PMID:23221781]
  6. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]