PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003228.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21555.5 Da    PI: 8.9903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003228.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.4e-191862145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 k+ienks  +vtf+kRr+g++ KA+EL+vL++ae+avi fs+  k
  CCG003228.1 18 KKIENKSSLEVTFTKRRKGLFNKASELCVLTGAEAAVIAFSPGKK 62
                 68***************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.3991070IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-261069IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-241081IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-161232IPR002100Transcription factor, MADS-box
PfamPF003191.5E-201966IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MATTVKKQSL GRQKIEIKKI ENKSSLEVTF TKRRKGLFNK ASELCVLTGA EAAVIAFSPG  60
KKAFAFGFPS VDTVIDRYIS ENTEEGRSVL NTSASHHRVV QESRKQYAEA LAKKEEEKKR  120
VETMKEGGKV GFGRDSFWWD LSIEDMGLEE LERYVASMEE LKKNVGIRVD ELEKASNSPS  180
RFLDLDSGLN AN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047019.11e-138PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2K2AMY21e-99A0A2K2AMY2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s00400.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29AGAMOUS-like 62