PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003291.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 217aa    MW: 24421 Da    PI: 8.1776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003291.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30127185159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYG+K+vk+s++pr+YY+C+s+gC vkk+ver++ed  +v++tY g Hnhe
  CCG003291.2 127 MDDGYKWRKYGKKSVKNSPNPRNYYKCSSSGCDVKKRVERDREDSAYVITTYDGVHNHE 185
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-32115187IPR003657WRKY domain
SuperFamilySSF1182906.8E-27120187IPR003657WRKY domain
PROSITE profilePS5081131.284122187IPR003657WRKY domain
SMARTSM007742.9E-33127186IPR003657WRKY domain
PfamPF031062.9E-23128185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDFPENPNHD FSYFDEGFDP PATEFQVSDY LMLDGGFGED NSSSQSMASS EQVPSGSSSG  60
YSGATSRNNS MQVIMMPSLD YSTATNSLIC YFLKKRKIKK CKNGVKKNKI EGGHRVAFRT  120
KSELEVMDDG YKWRKYGKKS VKNSPNPRNY YKCSSSGCDV KKRVERDRED SAYVITTYDG  180
VHNHESPCMV YYNNQIPLAV PNAWTFQDSS PRSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-25115187274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9297401e-127JQ929740.1 Populus maximowiczii DNA-binding WRKY (WRKY3-1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021947.11e-113PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A2K2ADP41e-104A0A2K2ADP4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08720.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-44WRKY DNA-binding protein 51