PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003310.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 369aa    MW: 40505 Da    PI: 6.5161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003310.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20150199255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa+a+++a+++++g
  CCG003310.1 150 KYRGVRQRP-WGKWAAEIRDpF-----KaCRVWLGTFDTAEAAARAYDEAALRFRG 199
                  8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-33149208IPR001471AP2/ERF domain
PfamPF008472.4E-14150199IPR001471AP2/ERF domain
CDDcd000181.18E-21150209No hitNo description
SMARTSM003808.2E-37150213IPR001471AP2/ERF domain
PROSITE profilePS5103225.409150207IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22150208IPR016177DNA-binding domain
PRINTSPR003671.8E-11151162IPR001471AP2/ERF domain
PRINTSPR003671.8E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCKLKVANKG DKIVKKEAGS VEEWPLPVML SGLNREREMS VMVTALTHVV AGNVPADDSD  60
CITEAVPNNQ DNCAHGDLSA KREREEGGGG SEEYKRHGRA FGDDFLHGGS SSAGRASGKS  120
IITMAPAATR MAFTPVYEYN ETCRDEPRRK YRGVRQRPWG KWAAEIRDPF KACRVWLGTF  180
DTAEAAARAY DEAALRFRGN KAKLNFPENV KLRPTPPDPI ANQLTVSDSP SSTVLLSVPT  240
STEAIVHSQA LHHTQNREIS REQVNQPQLI LGVGGYQRQP MSLYDQMFLS PPLVSSYPSM  300
SSSTEYSDPM FLAAQQPGEI MPATSSQSGG GGIQWXXXXX XXXXISQSGG EEFQWPAWSD  360
YSHYTSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22149210163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021970.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A3N7EX280.0A0A3N7EX28_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-21ethylene response factor 110