PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003374.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 535aa    MW: 60207.4 Da    PI: 4.7263
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003374.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.25.5e-1131575281374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfs 94 
                  lv+lLl+cAea+  +d++la+++L+++   +sp gd++qR+  +f+ +L++rl++ +  +   +++   + +++    +e++ a++l+++++P++ f+
  CCG003374.1 157 LVHLLLACAEALGCRDTRLAETMLSQIWPSVSPWGDSLQRVSYCFAMGLKSRLSHlNNVNAHGTFTIGGAMDRSlivRAEKMEAFQLLHQATPYIAFG 254
                  68****************************************************9333333334444444444467789999999************* PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledle 190
                  +++aN+aI +a+++++ +HiiD+++++ lQWp+L+++LasRpegpp+lRiTg+ +   ++  e e+  + La+ A++lg+++efn++ ++  + + l+
  CCG003374.1 255 FMAANEAICQAAQEKDSLHIIDLGMEHALQWPSLMRTLASRPEGPPKLRITGLID--GHNLLEHEASMKELAEEASSLGIRLEFNLV-SEpvSPSLLT 349
                  ******************************************************9..45899999999*****************96.442578899* PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                  +e+L++++gEal Vn++++lh++++es  + +   ++L+++k+l+P++++vveq+a+hn++ Fl rf+e+l+yysa+fdslea+lpr+s +rik+E++
  CCG003374.1 350 TENLSLREGEALFVNSIMHLHKFVKESRGSLK---AILQAIKNLNPTLLTVVEQDANHNGPFFLGRFIESLHYYSAIFDSLEASLPRNSPQRIKMEKV 444
                  ************************88777666...9************************************************************** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++ ei+n++a eg++r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy++  e+g+l+lgWk+rp++ +SaW+
  CCG003374.1 445 QFSTEICNIIAYEGSNRIERHERADQWRRQLSRAGFQVMGLK--CMSQARMMLSVYGIDGYTLATEKGCLLLGWKGRPIMLASAWQ 528
                  **************************************9985..89***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.956131510IPR005202Transcription factor GRAS
PfamPF035141.9E-110157528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEGMNDWLSF SMHESLNHDL AIRRFCPARM ELEQGEECWE EITFSEIELL SPDDDSTSPP  60
HMADSEVDEL VDSFINLDQD GEKDDKSFKK NQDFNHLQDD HIEAFSMVND VFQDVPKMNV  120
GSDELEMSSS FEGLEAVSDM EPRVEEMIQG VDQGLHLVHL LLACAEALGC RDTRLAETML  180
SQIWPSVSPW GDSLQRVSYC FAMGLKSRLS HLNNVNAHGT FTIGGAMDRS LIVRAEKMEA  240
FQLLHQATPY IAFGFMAANE AICQAAQEKD SLHIIDLGME HALQWPSLMR TLASRPEGPP  300
KLRITGLIDG HNLLEHEASM KELAEEASSL GIRLEFNLVS EPVSPSLLTT ENLSLREGEA  360
LFVNSIMHLH KFVKESRGSL KAILQAIKNL NPTLLTVVEQ DANHNGPFFL GRFIESLHYY  420
SAIFDSLEAS LPRNSPQRIK MEKVQFSTEI CNIIAYEGSN RIERHERADQ WRRQLSRAGF  480
QVMGLKCMSQ ARMMLSVYGI DGYTLATEKG CLLLGWKGRP IMLASAWQVH NLSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-651425272378Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167700.0AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022078.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_011022079.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_011022080.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLB9H6090.0B9H609_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-81RGA-like 1