PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003387.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 363aa    MW: 41241 Da    PI: 6.8838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003387.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
      CCG003387.1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding53.17.2e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      CCG003387.1  69 RGNFSKEEEDTIIKLHQTLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129413.8891163IPR017930Myb domain
SuperFamilySSF466899.73E-3014110IPR009057Homeodomain-like
SMARTSM007171.3E-121565IPR001005SANT/Myb domain
PfamPF002498.9E-151663IPR001005SANT/Myb domain
CDDcd001671.08E-81863No hitNo description
PROSITE profilePS5129424.93764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2767118IPR009057Homeodomain-like
SMARTSM007171.3E-1568116IPR001005SANT/Myb domain
PfamPF002497.6E-1669114IPR001005SANT/Myb domain
CDDcd001675.88E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSKEEEDTI IKLHQTLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLTL  120
KDDDERPKGD ESKESSSTSS SSSTSSTIVS SGKRNLEMQK NQGSSTKKTR ILENVKDSSP  180
REASNQHRPT KKPKELSSSS ISSNNSNITN SSQIDVSKPE DDQIGSLLNF RGLYDVHNSS  240
EEVNKPEEIT AEIPLESDYD FWNMLDSLSY LQSNEIQLEN VEAFQISKFG DAYNIGEVDQ  300
NKKWLRYLEN ELGLDVTKDE NQESSLKNAA ETLVPENFQY NMPLKPAEVL PGTIEIFPLW  360
PSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25161184105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-241611858159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-241611858159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-25161184105C-Myb DNA-Binding Domain
1msf_C6e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022095.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9H6240.0B9H624_POPTR; Uncharacterized protein
STRINGPOPTR_0005s09930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-76myb domain protein 58