PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003449.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 252aa    MW: 29432.7 Da    PI: 6.8835
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003449.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.91.1e-4171293128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPt+eel+++yL+k v g+++   ++i  +diy++ePwdLp   k +e+ewyf ++r++      r++r+t++gyWkatg+d+++ +    ++
  CCG003449.1   7 PGFRFHPTEEELLDFYLTKTVLGQDTA--DIIGFLDIYNHEPWDLPGLSKIGEREWYFLVHRESVL---GRPRRTTEKGYWKATGSDRPIRCLmdPKR 99 
                  9***********************943..68***************8778899********99976...59*******************98766788 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  l g +kt+vfy+grap+g+ktdWvm+eyrl
  CCG003449.1 100 LLGHRKTMVFYRGRAPRGSKTDWVMNEYRL 129
                  8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.5385147IPR003441NAC domain
SuperFamilySSF1019418.24E-485147IPR003441NAC domain
PfamPF023652.6E-237129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEFDELPGFR FHPTEEELLD FYLTKTVLGQ DTADIIGFLD IYNHEPWDLP GLSKIGEREW  60
YFLVHRESVL GRPRRTTEKG YWKATGSDRP IRCLMDPKRL LGHRKTMVFY RGRAPRGSKT  120
DWVMNEYRLP SNCYLSKEMV LCKVYRKATS LKVLEQRAAI EEMVRAPNVT SLSPPMQDNF  180
SFYDHQKSFN KFLFEQNNVV HKVEGVAVIE DEDSKIGYPS QIMGVGPIKE HYSELLSPKL  240
ALDWTIDSFW PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-35214712168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022209.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ10S653e-72NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2K2AER31e-179A0A2K2AER3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10610.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-82NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]