PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003660.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29326.7 Da    PI: 5.4717
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003660.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1960111556
                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  CCG003660.1  60 RRFSDEQVRSLESMFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 111
                  58*************************************************9 PP
2HD-ZIP_I/II1253.3e-4059149393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   rr+s+eqv++LE++Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+ktkq+E++y++Lk++yd+l+++ e+L++e+e+L  +l++
  CCG003660.1  59 TRRFSDEQVRSLESMFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKTKQMEQKYKTLKASYDNLASSYESLKNEKESLLVQLQT 149
                  69***********************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.62153113IPR001356Homeobox domain
SuperFamilySSF466892.22E-1855122IPR009057Homeodomain-like
SMARTSM003891.7E-1756117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-2060120IPR009057Homeodomain-like
CDDcd000866.55E-1760114No hitNo description
PfamPF000465.0E-1760111IPR001356Homeobox domain
PRINTSPR000315.1E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.1E-693109IPR000047Helix-turn-helix motif
PfamPF021833.7E-13113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSYQILIEGV EDFDQAVARD HAEAAESFAC VDDDDHQQQL EQISRRKKKK KKKGSKMNTR  60
RFSDEQVRSL ESMFESETKL EPRKKMQLAR ELGLQPRQVA IWFQNRRARW KTKQMEQKYK  120
TLKASYDNLA SSYESLKNEK ESLLVQLQTV SNQLGNPCKG LERCDRGIDA VLHDGITNCE  180
VETQQGLDNS SIMAIVCDDM SMGNGHSDDQ GQGFLYTGSP EYSDGTLASV YEKCYSTDSG  240
APFDLSWNNS YCFSFRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450RRKKKKK
24452RRKKKKKKK
34652KKKKKKK
4105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091840.0AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043718.10.0PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468975e-45ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2K1Y7S81e-175A0A2K1Y7S8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03080.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-45homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]