PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG003661.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 356aa MW: 40076.2 Da PI: 4.0972

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG003661.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.4	1.1e-26	13	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlsk 95 lp+G+rF+P++++l+v+yL++k+ g++l++ +vi+++d+y + P +Lp +k+ e +ew+fFs+r+k + a + gy + + +++ CCG003661.1 13 LPAGYRFSPNNDDLIVYYLRRKILGQQLPA-DVIPTTDVYASRPDKLPlDDFKGgEANEWFFFSNRSKDDG-----TIALDGGYYEIDPEgAGPITW- 103 799*************************.99***********7566662556***999765.....4678899955442688888. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg ktL fy+g++p+g++t+W+++e+r+ CCG003661.1 104 EEKVVGYVKTLNFYQGSSPNGTETEWMVEEFRV 136 999****************************97 PP
2	NAM	40.3	9.8e-13	152	249	21	122
NAM 21 kkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 +k+ g++l++ +vi+++d+y + P++Lp +k++ ew+fFs+r+k t a + gy + + ++ +++++g ktL fy+g++p+g CCG003661.1 152 EKILGQQLPA-DVITTTDVYASSPEKLPlDDFKGGVPnEWFFFSTRSKDDGT-----IALDGGYYEIDPEGAWPTTWEEKVIGYVKTLNFYQGSSPNG 243 7899999999.99*************6666665545****998764.....455666666444433333336788999********** PP NAM 117 ektdWv 122 ++t+W+ CCG003661.1 244 TETEWM 249 ***7 PP
3	NAM	29.6	2e-09	254	321	56	128
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ew+fFs+r+k + a + gy + +++ +g++vg ktL fy+g++p+g +t+W+++e+r+ CCG003661.1 254 NEWFFFSNRSKDD-----NIIALDGGYYAIDPEgAGPITW-EGKVVGYVKTLNFYHGSSPNGAETEWMVEEFRI 321 699*9998854.....3457889998854442688888.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-30	7	140	IPR003441	NAC domain
PROSITE profile	PS51005	29.085	13	161	IPR003441	NAC domain
Pfam	PF02365	3.5E-15	14	136	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-14	152	249	IPR003441	NAC domain
PROSITE profile	PS51005	12.521	204	350	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-13	254	348	IPR003441	NAC domain
Pfam	PF02365	7.3E-5	256	321	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MASAGQTLNR PTLPAGYRFS PNNDDLIVYY LRRKILGQQL PADVIPTTDV YASRPDKLPL 60 DDFKGGEANE WFFFSNRSKD DGTIALDGGY YEIDPEGAGP ITWEEKVVGY VKTLNFYQGS 120 SPNGTETEWM VEEFRVNPEF VPLNNNDRST QEKILGQQLP ADVITTTDVY ASSPEKLPLD 180 DFKGGVPNEW FFFSTRSKDD GTIALDGGYY EIDPEGAWPT TWEEKVIGYV KTLNFYQGSS 240 PNGTETEWMG GVPNEWFFFS NRSKDDNIIA LDGGYYAIDP EGAGPITWEG KVVGYVKTLN 300 FYHGSSPNGA ETEWMVEEFR INPEFVPSNN TDRSTQEKIE NLVACKISRV QPEPEW

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MASAGQTLNR PTLPAGYRFS PNNDDLIVYY LRRKILGQQL PADVIPTTDV YASRPDKLPL  60
DDFKGGEANE WFFFSNRSKD DGTIALDGGY YEIDPEGAGP ITWEEKVVGY VKTLNFYQGS  120
SPNGTETEWM VEEFRVNPEF VPLNNNDRST QEKILGQQLP ADVITTTDVY ASSPEKLPLD  180
DFKGGVPNEW FFFSTRSKDD GTIALDGGYY EIDPEGAWPT TWEEKVIGYV KTLNFYQGSS  240
PNGTETEWMG GVPNEWFFFS NRSKDDNIIA LDGGYYAIDP EGAGPITWEG KVVGYVKTLN  300
FYHGSSPNGA ETEWMVEEFR INPEFVPSNN TDRSTQEKIE NLVACKISRV QPEPEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-17	13	136	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209184	1e-132	AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043719.1	1e-107	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A3N7FW08	2e-96	A0A3N7FW08_POPTR; Uncharacterized protein
STRING	POPTR_0012s03130.1	4e-97	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14452	7	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	2e-23	NAC domain containing protein 86