PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003680.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 608aa    MW: 67829.6 Da    PI: 4.6822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003680.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.3e-53111381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+P+deelv++yL++k++gk+ ++ +vi+ +d++k+ePwdLp  + +k+++ ew+fF++ d+ky++g+r+nrat++gyWkatgkd++++s +
  CCG003680.1  11 LPLGFRFRPSDEELVNYYLRHKINGKDDKV-KVIRGIDVCKWEPWDLPvlSIIKNKDPEWFFFCPLDRKYPNGSRQNRATDAGYWKATGKDRKIKS-G 106
                  699************************999.99***************6337778888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l+g+kktLvfy+grapkg++t+Wvmheyr+
  CCG003680.1 107 NRLIGMKKTLVFYTGRAPKGKRTNWVMHEYRA 138
                  99****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-614161IPR003441NAC domain
PROSITE profilePS5100556.8311161IPR003441NAC domain
PfamPF023653.3E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAVMSLNLNS LPLGFRFRPS DEELVNYYLR HKINGKDDKV KVIRGIDVCK WEPWDLPVLS  60
IIKNKDPEWF FFCPLDRKYP NGSRQNRATD AGYWKATGKD RKIKSGNRLI GMKKTLVFYT  120
GRAPKGKRTN WVMHEYRATE EELDGTKPGQ SAFVLCRLFK KQDESIESPN CNEAEATVSS  180
PTTAQSSPEV AQFDQPLTEA SPANTTTSEV VAPVEFPSCS VGVSEGGDQT ADLPASEEEL  240
QLEEALNWLF DSPPQALDYE LFPPVHEQVH EAVGSSSMFN HGNNDLSSSN RGLQSHNVGN  300
ETDDYTSEFI DSILKQPNEL LYEVPGFQNN SSFPSESLFR GSLLRVVEDN GSYSGSDVDM  360
EPIRIEKGFQ GAYFPEGNID EKPSSTLLYD SNVHQQPIYL GSLQNGSYAP QSVASISATD  420
QLNTLNKPSN STNEVGGSDA NWNGIRTRVR NPQNRQFGRN FIIQGEAPRR LHLQCKLQVQ  480
PIQFSTKSED FNSGEGELEY ECIVTKEIEV SETNAMDEDS YTNAIDEQLK PTLVKVSETI  540
KFSEELIPNN GTAVKNDRSM LSKVSCMFSK ASSACGSIWS ITMFRVAVLA VLFAVLVSRC  600
RYFFLDTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461016516169NO APICAL MERISTEM PROTEIN
1ut4_B3e-461016516169NO APICAL MERISTEM PROTEIN
1ut7_A3e-461016516169NO APICAL MERISTEM PROTEIN
1ut7_B3e-461016516169NO APICAL MERISTEM PROTEIN
4dul_A3e-461016516169NAC domain-containing protein 19
4dul_B3e-461016516169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043746.10.0PREDICTED: uncharacterized protein LOC105139114
SwissprotQ9LKG83e-98NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A2K1Y6Z10.0A0A2K1Y6Z1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s00760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.24e-98TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]