PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003693.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 352aa    MW: 38545.9 Da    PI: 6.6855
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003693.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.9e-2799181271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  CCG003693.1  99 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadpsnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 181
                  689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.8E-1361352IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.1E-4596187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-3598181IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-25100181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-21101182IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.04E-45186289IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-77188350IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-43188302No hitNo description
PfamPF087818.8E-42189302IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVTGGGHLED GDRHPSSAAT RGGGATTGSW VSGQSVSTSG SVGSPSSRSE HAMATPASDN  60
TFLRLNHLDI HADDAATQDA AVNKKKKRGQ RASGGADKSG RGLRQFSMKV CEKVESKGTT  120
TYNEVADELV AEFADPSNSV STPDQQQYDE KNIRRRVYDA LNVLMALDII SKDKKEIQWK  180
GLPRTSLSDI EELKAERLGL RNRIEKKAAY LQELEEQFIG LQNLIQRNEQ LYSSGNAPSG  240
GVSLPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDNYVLKAMK FCERPQSDNM  300
APNPAADGGE GSSMSIMYQP QIRTSPRTNN PVRLSTSPPL PGIIKARVKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3893186293PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1819980.0AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds.
GenBankAY3073730.0AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013076.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-157DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB9IFR20.0B9IFR2_POPTR; Uncharacterized protein
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-147Transcription factor DP